View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5715-Insertion-8 (Length: 284)
Name: NF5715-Insertion-8
Description: NF5715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5715-Insertion-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 284
Target Start/End: Complemental strand, 43570550 - 43570275
Alignment:
| Q |
7 |
accaatgccaagtaaggcagccacccaaacggtctaagaaaccnnnnnnncaagacccagcacagcaaaaaacaatactgcaaagctttacagaaagtca |
106 |
Q |
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| T |
43570550 |
accaatgccaagtaaggcagccacccaaacggtctaagaaaccaaaaa--caagacccagcacagcaaaaaacaatactgcaaagctttacagaaagtca |
43570453 |
T |
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| Q |
107 |
attagccactcaccccaaaaaccacccaccaaaaacagcagctgcaacagaaaaacatcactaaaatccacacccaataacagcgcccagaaagnnnnnn |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43570452 |
attagccactcaccccaaaaaccacccaccaaaaacagcagctgcaacagaaaaacatcactaaaatccacacccaataacagcgcccagaaagaaaaaa |
43570353 |
T |
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| Q |
207 |
nnnccaccacaccatcccaactaaacactccaaaacacagccgctagaacacctggccagacacaaaaactaccgatc |
284 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43570352 |
aaaccaccacagcatcccaactaaacactccaaaacacagccgctagaacacctggccagacacaaaaactaccgatc |
43570275 |
T |
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