View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5715-Insertion-9 (Length: 283)
Name: NF5715-Insertion-9
Description: NF5715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5715-Insertion-9 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 36369405 - 36369128
Alignment:
| Q |
8 |
aaatccccatgccatgccaaacaaccacttccaccattcctcacatcagcaactgcataggcagtacaagagcagtttctcaagcattctttctcacatt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36369405 |
aaatccccatgccatgccaaacaaccacttccaccattcctcacatcagcaactgcataggcagtacaagagcagtttctcaagcattctttctcacatt |
36369306 |
T |
|
| Q |
108 |
cttccaaactcaaaccacctttagcaaccgctacagatgtatcaggaactttcaagctcacaactttgacaaacccttctccattcccacaaaccgatac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36369305 |
cttccaaactcaaaccacctttagcaaccgccacagatgtatcgggaactttcaagctcacaactttgacaaacccttctccattcccacaaaccgatac |
36369206 |
T |
|
| Q |
208 |
acctttcttccttacacaccctcccgacccatctcta-ctcataccaatcacgtggaaa-ttttgcttcaaaaccaag |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
36369205 |
acctttcttccttacacaccctcccgacccatctctatctcataccaatcacgtggaaatttttgcttcaaaaccaag |
36369128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 36404696 - 36404419
Alignment:
| Q |
8 |
aaatccccatgccatgccaaacaaccacttccaccattcctcacatcagcaactgcataggcagtacaagagcagtttctcaagcattctttctcacatt |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36404696 |
aaatccccatgccatgccaaacatccactaccaccattcctcacatcagcaactgcataggcagtacaagagcaatttctcaagcattctttctcacatt |
36404597 |
T |
|
| Q |
108 |
cttccaaactcaaaccacctttagcaaccgctacagatgtatcaggaactttcaagctcacaactttgacaaacccttctccattcccacaaaccgatac |
207 |
Q |
| |
|
||||||||||||||||| || | ||||| ||| ||||| |||||| |||||||| || |||||||| | ||||||||||||||||||||||| ||| | |
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| T |
36404596 |
cttccaaactcaaaccatctatggcaactgctccagatatatcagcaactttcacacttacaacttttataaacccttctccattcccacaaatagatgc |
36404497 |
T |
|
| Q |
208 |
acctttcttccttacacaccctcccgacccatctcta--ctcataccaatcacgtggaaattttgcttcaaaaccaag |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
36404496 |
acctttcttccttacacaccctcccgacccatctctactctcataccaatcacgtggaaattttggttcaaaaccaag |
36404419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 36374024 - 36373750
Alignment:
| Q |
8 |
aaatccccatgccatgccaaacaaccacttccaccattcctcacatcagcaactgcataggcagtacaagagcagtttctcaagcattctttctcacatt |
107 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |
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| T |
36374024 |
aaatccccataccatgccaaacagccacttccaccattactcacatcagcaactgcataggaagtacaagagcagtttctcaagcattcttcctcgcatt |
36373925 |
T |
|
| Q |
108 |
cttccaaactcaaaccacctttagcaaccgctacagatgtatcaggaactttcaagctcacaactttgacaaacccttctccattcccacaaaccgatac |
207 |
Q |
| |
|
|||||||||||| ||||||||||| ||| || |||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| ||| | |
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| T |
36373924 |
cttccaaactcagaccacctttagtaactgccacagatatatcaggaactttcaagcttgcaactttgataaacccttctccattccgacaaatagatgc |
36373825 |
T |
|
| Q |
208 |
acctttcttccttacacaccctcccgacccatctct--actcataccaatcacgtggaaattttgcttcaaaacc |
280 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
36373824 |
gcctttcttccttacacaccctcctgacccatctcttctctcataccaatcacgtggaaattttggttcaaaacc |
36373750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 36387984 - 36387706
Alignment:
| Q |
8 |
aaatccccatgccatgccaaacaaccacttccaccattcctcacatcagcaactgcataggcagtacaagagcagtttctcaagcattctttctcacatt |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
36387984 |
aaatccccatgccatgccaaacatccacttccaccattcctcacatcagcaattgaataggcagtacaagaacagttttgcaagcattctttctcacatt |
36387885 |
T |
|
| Q |
108 |
cttccaaactcaaaccacctttagcaaccgctacagatgtatcaggaactttcaagctcacaactttgacaaacccttctccattcccacaaaccgatac |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||| || |
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| T |
36387884 |
cttccaaactcaaaccacttttagcaactgccacagatgtatcaggaactttcaagcttacaactttgataaacccttctccattctcacaaacagacga |
36387785 |
T |
|
| Q |
208 |
acctttcttccttacacaccctcccgacccatc-tcta--ctcataccaatcacgtggaaattttgcttcaaaaccaag |
283 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| || ||||||||||||||||||||| | |||| ||||||| |
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| T |
36387784 |
gcctttcttccttacacaccctcccgtcccatcttctattctgataccaatcacgtggaaatttgggttcataaccaag |
36387706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 36397763 - 36397486
Alignment:
| Q |
8 |
aaatccccatgccatgccaaacaaccacttccaccattcctcacatcagcaactgcataggcagtacaagagcagtttctcaagcattctttctcacatt |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
36397763 |
aaatccccatgccatgccaaacatccactaccaccattcctcacatcggctactgcataggaagtacaggagcagtttctcaagcattctttctcacatt |
36397664 |
T |
|
| Q |
108 |
cttccaaactcaaaccacctttagcaaccgctacagatgtatcaggaactttcaagctcacaactttgacaaacccttctccattcccacaaaccgatac |
207 |
Q |
| |
|
| ||||||||||||||| || | | ||| || ||||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||||| || ||| | |
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|
| T |
36397663 |
catccaaactcaaaccatctatggtaactgccccagatatatcaggaactttcaagcttacaactttgataaacccttcgccattcccacagacagatgc |
36397564 |
T |
|
| Q |
208 |
acctttcttccttacacaccctcccgacccatctcta--ctcataccaatcacgtggaaattttgcttcaaaaccaag |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| |||||||||||| |
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|
| T |
36397563 |
acctttcttccttacacaccctcccgacccatctctactctcataccaatcgcttggaaattttggttcaaaaccaag |
36397486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 36426176 - 36425899
Alignment:
| Q |
8 |
aaatccccatgccatgccaaacaaccacttccaccattcctcacatcagcaactgcataggcagtacaagagcagtttctcaagcattctttctcacatt |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36426176 |
aaatccccatgccatgccaaacatccacttccaccattcttcacgtcagcaactgcataggcagtacaagagcagtttctcaagcattctttctcacatt |
36426077 |
T |
|
| Q |
108 |
cttccaaactcaaaccacctttagcaaccgctacagatgtatcaggaactttcaagctcacaactttgacaaacccttctccattcccacaaaccgatac |
207 |
Q |
| |
|
| |||||| |||||||| || | ||||| || ||| || ||||||||||| | ||| |||||||||| ||||||||||||||| |||||||| ||| | |
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|
| T |
36426076 |
catccaaattcaaaccatctatggcaactgccgtagacgtttcaggaacttttacgcttacaactttgataaacccttctccatttccacaaacagatgc |
36425977 |
T |
|
| Q |
208 |
acctttcttccttacacaccctcccgacccatctcta--ctcataccaatcacgtggaaattttgcttcaaaaccaag |
283 |
Q |
| |
|
||||||||| |||||||| || || |||||||||| | |||||||||||| ||||||||||||| ||| |||||||| |
|
|
| T |
36425976 |
acctttctttcttacacatccacctgacccatctcgactctcataccaatctcgtggaaattttggttcgaaaccaag |
36425899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 36412010 - 36411733
Alignment:
| Q |
8 |
aaatccccatgccatgccaaacaaccacttccaccattcctcacatcagcaactgcataggcagtacaagagcagtttctcaagcattctttctcacatt |
107 |
Q |
| |
|
|||| ||||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
36412010 |
aaattcccatgccacgtcaaacatccactaccaccattcctcacatcagcaactgcataggcattacaagaacagtttctcaagcaatctttctcacatt |
36411911 |
T |
|
| Q |
108 |
cttccaaactcaaaccacctttagcaaccgctacagatgtatcaggaactttcaagctcacaactttgacaaacccttctccattcccacaaaccgatac |
207 |
Q |
| |
|
|||||||| |||||||| || | ||||| || ||||| ||||||||||||||| || | ||||||| |||||||||||||||||||||||| ||| | |
|
|
| T |
36411910 |
cttccaaagtcaaaccatctatggcaactgccccagatatatcaggaactttcacccttaaaactttgttaaacccttctccattcccacaaacagatgc |
36411811 |
T |
|
| Q |
208 |
acctttcttccttacacaccctcccgacccatctcta--ctcataccaatcacgtggaaattttgcttcaaaaccaag |
283 |
Q |
| |
|
|||| | || |||||||| |||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36411810 |
acctctttttcttacacatcctcccaacccatctctactctcataccaatcacgtggaaattttggttcaaaaccaag |
36411733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 36417341 - 36417064
Alignment:
| Q |
8 |
aaatccccatgccatgccaaacaaccacttccaccattcctcacatcagcaactgcataggcagtacaagagcagtttctcaagcattctttctcacatt |
107 |
Q |
| |
|
|||| ||||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| |
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|
| T |
36417341 |
aaattcccatgccacgtcaaacatccactaccaccattcctcacatcagcaactgcataggcattacaagaacagtttctcaagcaatctttctcacatt |
36417242 |
T |
|
| Q |
108 |
cttccaaactcaaaccacctttagcaaccgctacagatgtatcaggaactttcaagctcacaactttgacaaacccttctccattcccacaaaccgatac |
207 |
Q |
| |
|
|||||||| |||||||| || | ||||| || ||||| ||||||||||||||| || | ||||||| |||||||||||||||||||||||| ||| | |
|
|
| T |
36417241 |
cttccaaagtcaaaccatctatggcaactgccccagatatatcaggaactttcacccttaaaactttgttaaacccttctccattcccacaaacagatgc |
36417142 |
T |
|
| Q |
208 |
acctttcttccttacacaccctcccgacccatctcta--ctcataccaatcacgtggaaattttgcttcaaaaccaag |
283 |
Q |
| |
|
|||| | || |||||||| |||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36417141 |
acctctttttcttacacatcctcccaacccatctctactctcataccaatcacgtggaaattttggttcaaaaccaag |
36417064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 36434033 - 36433758
Alignment:
| Q |
8 |
aaatccccatgccatgccaaacaaccacttccaccattcctcacatcagcaactgcataggcagtacaagagcagtttctcaagcattctttctcacatt |
107 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||||||| ||||||| | ||||||||||||| |||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
36434033 |
aaatcaccatgccatgccaaacacccgcttccaccattgctcacattatcaactgcataggctgtacaagaacagtttctgaagcattctttttcacatt |
36433934 |
T |
|
| Q |
108 |
cttccaaactcaaaccacctttagcaaccgctacagatgtatcaggaactttcaagctcacaactttgacaaacccttctccattcccacaaaccgatac |
207 |
Q |
| |
|
|||||||||||||||||||||| ||| || | ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| ||| |
|
|
| T |
36433933 |
cttccaaactcaaaccacctttggcatttgccatcgatgtatcaggaactttcaagctgacaattttgataaacccttctccattcccacaaacagatga |
36433834 |
T |
|
| Q |
208 |
acctttcttccttacacaccctcccgacccatctcta--ctcataccaatcacgtggaaattttgcttcaaaacca |
281 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||| | |||||||||||| | |||| |||| | |||||||||| |
|
|
| T |
36433833 |
accgttcttccttacacaccctcctgacccatctccactctcataccaatcgcctggagatttgggttcaaaacca |
36433758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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