View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5715_high_1 (Length: 615)

Name: NF5715_high_1
Description: NF5715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5715_high_1
NF5715_high_1
[»] chr7 (2 HSPs)
chr7 (210-599)||(36072131-36072521)
chr7 (72-217)||(36073240-36073383)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 210 - 599
Target Start/End: Complemental strand, 36072521 - 36072131
Alignment:
Q  210 ggacgttgggattaaaagggaagtagactgagatatatttaggttcttggcattcaaaactacttaaaaagacgatgatcttatagtcaggagaactgat 309  Q
    |||||||||||||||||||||||||||||||||||||    ||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||    
T  36072521 ggacgttgggattaaaagggaagtagactgagatata----ggttcttagctttcaaaactacttaaaaagacgatgatcttatagtcagaagaactgat 36072426  T
Q  310 tgtttcaattaaattaattgggagaactgagatcatggtttgtttaagaaggaatcaacaaggagtaataacaattgacctaacctaacagaagccgaaa 409  Q
    ||||||||||||     ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||     ||||   ||||||||||    
T  36072425 tgtttcaattaa-----ttgggagaactgagatcatcgtttgtttaagaaggaatcaacaaggagtaattacaattga-----cctattggaagccgaaa 36072336  T
Q  410 agggttacaacaactataactcc-----tactttacggtgta---atgacactattcacgcgcaacttcatattaatattgccacatcatctcatttctc 501  Q
    |||||||||||||||| ||||||     ||||||||||||||   |||| ||||||||||| |||||||| |||||||||| | ||||||||  ||||||    
T  36072335 agggttacaacaacta-aactcctactttactttacggtgtaatgatgatactattcacgcacaacttcagattaatattgtcccatcatcttctttctc 36072237  T
Q  502 ataaatcaaccaatgatacaacaacacaaacgagcttttatttacacctaaaaatagtt-----------tatgacttgttgccctcaactgaggaataa 590  Q
    |||||||||||||||||   || ||||||||||||||||||||| || |||||||||||           ||||||||||||||||||||||||||||||    
T  36072236 ataaatcaaccaatgat---acgacacaaacgagcttttatttaaacataaaaatagttttcctgttacctatgacttgttgccctcaactgaggaataa 36072140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 72 - 217
Target Start/End: Complemental strand, 36073383 - 36073240
Alignment:
Q  72 ctaacatttactatataggagataaatttttcaacaagcccgtcttcaatataaataataataatcatgcaatccctaagaaaatcatttccttattgga 171  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  36073383 ctaacatttactatataggagataaatttgtcaacaagcccgtcttcaatataaa--ataataatcatgcaatccctaagaaaatcattttcttattgga 36073286  T
Q  172 taggatagagtgataattttgaaatgcacatattatgtggacgttg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  36073285 taggatagagtgataattttgaaatgcacatattatgtggacgttg 36073240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University