View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5715_high_15 (Length: 234)
Name: NF5715_high_15
Description: NF5715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5715_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 13098141 - 13098347
Alignment:
| Q |
10 |
ccaagaatattaaaatagttaaatgatctgtaagggattgtaccataaagtcagttgcaaggatccaagtannnnnnnngtctagtatttgatatatata |
109 |
Q |
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| T |
13098141 |
ccaagaagattaaaatagttaaatgatctgcaagggattgtaccataaagtcagttgcaaggatccaaatattttttttgtttggtatttgatatatata |
13098240 |
T |
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| Q |
110 |
gattaattcattgcagctgaatacgctggatttagctcctaccaaccagcttacctaagcttaaataccaaaggagacaacctcttgaacggtgccaact |
209 |
Q |
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| T |
13098241 |
gattaattcattgcagctgaatacgctggatttagctcctaccaaccagcttacctaagcttaaataccaaaggagacaacctcttgaacggtgccaact |
13098340 |
T |
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| Q |
210 |
tcgcgtc |
216 |
Q |
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||||||| |
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| T |
13098341 |
tcgcgtc |
13098347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 20593002 - 20593117
Alignment:
| Q |
95 |
tatttgatatatatagattaattcattgcagctgaatacgctggatttagctcctaccaaccagcttacctaagcttaaataccaaaggagacaacctct |
194 |
Q |
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| T |
20593002 |
tatttgatctatatatgttaatttattgcagccgaatttgctggatttacatcttatcaaccagcttacctaaacttaaataccaaaggaagcaacatct |
20593101 |
T |
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| Q |
195 |
tgaacggtgccaactt |
210 |
Q |
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|||| ||||||||||| |
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| T |
20593102 |
tgaatggtgccaactt |
20593117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 210
Target Start/End: Original strand, 17836780 - 17836899
Alignment:
| Q |
91 |
ctagtatttgatatatatagattaattcattgcagctgaatacgctggatttagctcctaccaaccagcttacctaagcttaaataccaaaggagacaac |
190 |
Q |
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| T |
17836780 |
ctagtatttgatctatatatgttaatttattgcagccgaattcgctggatttacatcttatcaaccagcttacgtaaatttaaataccaaaggaaacaac |
17836879 |
T |
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| Q |
191 |
ctcttgaacggtgccaactt |
210 |
Q |
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| T |
17836880 |
atcttgaacggtgccaactt |
17836899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 26061040 - 26060982
Alignment:
| Q |
152 |
caaccagcttacctaagcttaaataccaaaggagacaacctcttgaacggtgccaactt |
210 |
Q |
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| T |
26061040 |
caaccagcttacataaacttaaataccaaaagaaacaaaatcttgaacggtgccaactt |
26060982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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