View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5715_high_6 (Length: 344)
Name: NF5715_high_6
Description: NF5715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5715_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 321
Target Start/End: Complemental strand, 13133820 - 13133500
Alignment:
| Q |
10 |
gacatcatcaatcaagaagacaacaacgaccaccaaannnnnnnnattaaaaaacgatgaaaaataaagaggtgtcatgagggacaagaaccaaaactca |
109 |
Q |
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| T |
13133820 |
gacaccatcaatcaagaagacaacaacgaccaccaaattttttttattaaaaaacgatgaaaaataaagaggtgtcatgagggacaagaaccaaaactca |
13133721 |
T |
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| Q |
110 |
ttaaaac--------ttacacctcaaagcatacaaa-ccacattcattacggtcatagggaacattatctcagcaagtatagcaacgagaaacaatacta |
200 |
Q |
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| T |
13133720 |
ttaaaacaatgttacttacacctcaaagcatacaaaaccacattcattacggtcatagggaacattatctcagcaagtatagcaacgagaaacaatacta |
13133621 |
T |
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| Q |
201 |
aaataggcaggactatatgcacaagaattaccttctatataaataaatatatgagaaactaaagataattttgagattccaaggaacaagatcattatta |
300 |
Q |
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| T |
13133620 |
aaataggcaggactatatgtacaagaattaccttctatataaataaatatatgagaaactaaagataattttgagattccaaggaacaagatcattatta |
13133521 |
T |
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| Q |
301 |
gagaatgcaccatgagcttag |
321 |
Q |
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||||||||||||||||||||| |
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| T |
13133520 |
gagaatgcaccatgagcttag |
13133500 |
T |
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