View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5715_high_7 (Length: 308)
Name: NF5715_high_7
Description: NF5715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5715_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 22505820 - 22505535
Alignment:
| Q |
16 |
aatattccacacagcaagtttttccatcttgatgtcattttctgctgtctttcctcttcagattcatggagtgacgtttggaaacaaaaataggcattag |
115 |
Q |
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| T |
22505820 |
aatattccacacagcaagtttttccatcttgatgtcattttctgctgtctttcctcttcagattcatggagtgacgtttggaaacaaaaataggcattag |
22505721 |
T |
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| Q |
116 |
ttttcacttattatttagcatcttccgtttatacttgacatatttatatactgaattttgttgcatttatagtatatactttcgaaatctaatggttcta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22505720 |
ttttcacttattatttagcatcttccgtttatacttgacatatttatatactgaattttgttgcatttatagtatatactttcgaaatctaatggttcta |
22505621 |
T |
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| Q |
216 |
ctacatgttcaagatatcgtttgtcatttaatatatttacgatttcggttaaagaattttagtactcttttccttatttcttttca |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22505620 |
ctacatgttcaagatatcgtttgtcatttaatatatttacgatttcggttaaagaattttagtactcttttccttatttcttttca |
22505535 |
T |
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