View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5715_low_10 (Length: 266)

Name: NF5715_low_10
Description: NF5715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5715_low_10
NF5715_low_10
[»] scaffold0155 (1 HSPs)
scaffold0155 (77-255)||(774-966)
[»] chr4 (2 HSPs)
chr4 (139-255)||(42390515-42390630)
chr4 (74-111)||(42390668-42390705)


Alignment Details
Target: scaffold0155 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 77 - 255
Target Start/End: Complemental strand, 966 - 774
Alignment:
Q  77 taatagaagatataaacacatgtatttttgtattcttgcatgtgtgtatccaagtga-----------ttgtaacacattttccttcattctcgtccaca 165  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||           ||||||||||||||||||||||||||||||||    
T  966 taatagaagaaataaacacatgtatttttgtattcttgcatgcgtgtatccaactgacgtcaaagtaattgtaacacattttccttcattctcgtccaca 867  T
Q  166 cccttcatgcaaaatatccatatactgttttctttttgtttatttccattccattgttggccgctcct---tatcttcaacactgtttcctat 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||    
T  866 cccttcatgcaaaatatccatatactgttttctttttgtttatttccattccattgatggccgctccttactatcttcaacactgtttcctat 774  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 139 - 255
Target Start/End: Complemental strand, 42390630 - 42390515
Alignment:
Q  139 acacattttccttcattctcgtccacacccttcatgcaaaatatccatatactgttttctttttgtttatttccattccattgttggccgctcct---ta 235  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||   ||    
T  42390630 acacattttccttcattctcgtccac--ccttcatgcaaaatatccata--ctgttttccttttgtttatttccattccattgttggccgctccttaata 42390535  T
Q  236 tcttcaacactgtttcctat 255  Q
    ||||||||||||||||||||    
T  42390534 tcttcaacactgtttcctat 42390515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 42390705 - 42390668
Alignment:
Q  74 aattaatagaagatataaacacatgtatttttgtattc 111  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42390705 aattaatagaaaatataaacacatgtatttttgtattc 42390668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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