View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5715_low_11 (Length: 257)

Name: NF5715_low_11
Description: NF5715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5715_low_11
NF5715_low_11
[»] chr1 (13 HSPs)
chr1 (106-242)||(6346642-6346778)
chr1 (1-42)||(16045823-16045864)
chr1 (1-42)||(18404441-18404482)
chr1 (1-37)||(40214992-40215028)
chr1 (1-42)||(19015403-19015444)
chr1 (1-42)||(25463675-25463716)
chr1 (4-45)||(34519754-34519795)
chr1 (1-37)||(3559621-3559657)
chr1 (1-37)||(6883491-6883527)
chr1 (1-37)||(9910318-9910354)
chr1 (1-37)||(36966733-36966769)
chr1 (1-37)||(37821859-37821895)
chr1 (1-37)||(44094702-44094738)
[»] chr8 (16 HSPs)
chr8 (1-42)||(26042141-26042182)
chr8 (1-42)||(1645990-1646031)
chr8 (1-42)||(15187559-15187600)
chr8 (1-42)||(32064744-32064785)
chr8 (1-42)||(37986080-37986121)
chr8 (1-37)||(24211578-24211614)
chr8 (1-37)||(32393862-32393898)
chr8 (1-37)||(34665386-34665422)
chr8 (1-42)||(17841875-17841916)
chr8 (1-42)||(40780154-40780195)
chr8 (1-42)||(42755067-42755108)
chr8 (1-37)||(8453838-8453874)
chr8 (1-37)||(14128868-14128904)
chr8 (1-37)||(20091826-20091862)
chr8 (1-37)||(35353045-35353081)
chr8 (1-33)||(38016979-38017011)
[»] chr7 (12 HSPs)
chr7 (1-44)||(35444555-35444598)
chr7 (1-43)||(15577875-15577917)
chr7 (1-42)||(15329272-15329313)
chr7 (1-42)||(45637711-45637752)
chr7 (1-37)||(3961983-3962019)
chr7 (1-37)||(4974760-4974796)
chr7 (1-37)||(24394976-24395012)
chr7 (1-37)||(42611815-42611851)
chr7 (1-37)||(48880952-48880988)
chr7 (1-37)||(20010122-20010158)
chr7 (1-41)||(29737139-29737179)
chr7 (1-37)||(34482839-34482875)
[»] chr5 (14 HSPs)
chr5 (1-44)||(3362775-3362818)
chr5 (1-44)||(38899751-38899794)
chr5 (1-42)||(2477635-2477676)
chr5 (1-42)||(6043536-6043577)
chr5 (1-37)||(11361156-11361192)
chr5 (1-37)||(12850805-12850841)
chr5 (4-43)||(13664640-13664679)
chr5 (3-38)||(27481829-27481864)
chr5 (1-42)||(4892201-4892242)
chr5 (1-42)||(8145374-8145415)
chr5 (1-42)||(14138667-14138708)
chr5 (1-37)||(37321818-37321855)
chr5 (1-37)||(25398242-25398278)
chr5 (1-37)||(33584354-33584390)
[»] chr3 (19 HSPs)
chr3 (3-42)||(24343546-24343585)
chr3 (1-44)||(42297350-42297393)
chr3 (1-43)||(22426369-22426411)
chr3 (1-42)||(2754716-2754757)
chr3 (1-42)||(3574552-3574593)
chr3 (1-42)||(11347267-11347308)
chr3 (1-37)||(3456068-3456104)
chr3 (1-37)||(6041888-6041924)
chr3 (1-37)||(19650925-19650961)
chr3 (1-37)||(37217078-37217114)
chr3 (1-37)||(48160909-48160945)
chr3 (1-42)||(3137439-3137480)
chr3 (1-42)||(33113792-33113833)
chr3 (1-42)||(34482935-34482976)
chr3 (1-42)||(36865052-36865093)
chr3 (4-37)||(40327879-40327912)
chr3 (1-37)||(8320609-8320645)
chr3 (1-37)||(30385015-30385051)
chr3 (3-35)||(41224239-41224271)
[»] chr2 (10 HSPs)
chr2 (1-44)||(35160754-35160797)
chr2 (1-37)||(10661891-10661927)
chr2 (1-37)||(21936085-21936121)
chr2 (1-43)||(7475533-7475575)
chr2 (4-42)||(9293604-9293642)
chr2 (4-37)||(9723409-9723442)
chr2 (1-42)||(13354845-13354886)
chr2 (1-42)||(23268087-23268128)
chr2 (4-44)||(14941394-14941434)
chr2 (1-37)||(33380211-33380247)
[»] chr4 (15 HSPs)
chr4 (1-43)||(31078844-31078886)
chr4 (1-42)||(4751445-4751486)
chr4 (1-42)||(10442814-10442855)
chr4 (3-44)||(33530715-33530756)
chr4 (1-42)||(50156603-50156644)
chr4 (1-37)||(2624841-2624877)
chr4 (1-37)||(7745137-7745173)
chr4 (1-37)||(22199265-22199301)
chr4 (1-37)||(36072951-36072987)
chr4 (1-37)||(49387913-49387949)
chr4 (1-42)||(21802347-21802388)
chr4 (1-42)||(24128238-24128279)
chr4 (1-42)||(36073349-36073390)
chr4 (3-44)||(44893241-44893282)
chr4 (1-42)||(47290065-47290106)
[»] chr6 (10 HSPs)
chr6 (1-42)||(6127274-6127315)
chr6 (1-42)||(23291109-23291150)
chr6 (1-42)||(28675147-28675188)
chr6 (1-42)||(33695352-33695393)
chr6 (1-42)||(33696695-33696736)
chr6 (1-37)||(17705490-17705526)
chr6 (1-42)||(18365598-18365639)
chr6 (1-42)||(18370862-18370903)
chr6 (1-37)||(17176046-17176082)
chr6 (1-37)||(25986934-25986970)
[»] scaffold0178 (1 HSPs)
scaffold0178 (1-37)||(11625-11661)
[»] scaffold0471 (1 HSPs)
scaffold0471 (1-42)||(12841-12882)
[»] scaffold0204 (1 HSPs)
scaffold0204 (1-42)||(4395-4436)
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-42)||(41010-41051)
[»] scaffold0665 (1 HSPs)
scaffold0665 (1-37)||(3072-3108)
[»] scaffold0085 (1 HSPs)
scaffold0085 (1-37)||(47854-47890)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 106 - 242
Target Start/End: Original strand, 6346642 - 6346778
Alignment:
Q  106 ggtgatagaattagggtgagtcagtcattcaaacatttcgtaccgtttggctgccgtttcttgtgaactgcttaaagcctgtaccatttctcttccgcag 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6346642 ggtgatagaattagggtgagtcagtcattcaaacatttcgtaccgtttggctgccgtttcttgtgaactgcttaaagcctgtaccatttctcttccgcag 6346741  T
Q  206 tttctctctcgatactaccaaaagctttgaacaattt 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  6346742 tttctctctcgatactaccaaaagctttgaacaattt 6346778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16045823 - 16045864
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  16045823 aattttcttgataaaatctttcttgatatatagcattactct 16045864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18404482 - 18404441
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  18404482 aattttcttgataaaatctttcttgatatatagcattgctct 18404441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 40215028 - 40214992
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  40215028 aattttcttgataaaatctttcttgatatatagcatt 40214992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19015444 - 19015403
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||||| |||||||||||| |||||||||||| ||||    
T  19015444 aattttcttgaaaaaatctttcttgatatatagcattgctct 19015403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25463716 - 25463675
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||| |||||||||||||| |||||||||||| ||||    
T  25463716 aattttcttcataaaatctttcttgatatatagcattgctct 25463675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 34519795 - 34519754
Alignment:
Q  4 tttcttgataaaatctttcttaatatatagcattactctatc 45  Q
    |||||| |||||||||||||| |||||||||||| |||||||    
T  34519795 tttcttaataaaatctttcttgatatatagcattgctctatc 34519754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3559657 - 3559621
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  3559657 aatttttttgataaaatctttcttgatatatagcatt 3559621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6883527 - 6883491
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    ||||||||| | |||||||||||||||||||||||||    
T  6883527 aattttcttaaaaaaatctttcttaatatatagcatt 6883491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9910318 - 9910354
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  9910318 aattttcttgaaaaaatctttcttgatatatagcatt 9910354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36966733 - 36966769
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  36966733 aattttcttgaaaaaatctttcttgatatatagcatt 36966769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37821859 - 37821895
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  37821859 aattttcttgaaaaaatctttcttgatatatagcatt 37821895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44094738 - 44094702
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  44094738 aattttcttgataaaatatttcttgatatatagcatt 44094702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26042141 - 26042182
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  26042141 aattttcttgataaaatctttcttaatatatagcattgctct 26042182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1645990 - 1646031
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  1645990 aattttcttgataaaatctttcttgatatatagcattgctct 1646031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 15187600 - 15187559
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  15187600 aattttcttgataaaatctttcttgatatatagcattgctct 15187559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32064785 - 32064744
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  32064785 aattttcttgataaaatctttcttgatatatagcattgctct 32064744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37986080 - 37986121
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  37986080 aatttttttgataaaatctttcttgatatatagcattactct 37986121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24211578 - 24211614
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  24211578 aattttcttgataaaatctttcttgatatatagcatt 24211614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32393898 - 32393862
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  32393898 aattttcttgataaaatctttcttgatatatagcatt 32393862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34665422 - 34665386
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  34665422 aattttcttgataaaatctttcttgatatatagcatt 34665386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17841875 - 17841916
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||||| |||||||||||| |||||||||||| ||||    
T  17841875 aattttcttgaaaaaatctttcttgatatatagcattgctct 17841916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40780154 - 40780195
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||||| |||||||||||| |||||||||||| ||||    
T  40780154 aattttcttgaaaaaatctttcttgatatatagcattgctct 40780195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42755067 - 42755108
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| ||||||| |||| ||||    
T  42755067 aattttcttgataaaatctttcttgatatatatcattgctct 42755108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8453874 - 8453838
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  8453874 aattttcttgaaaaaatctttcttgatatatagcatt 8453838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14128904 - 14128868
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  14128904 aattttattgataaaatctttcttgatatatagcatt 14128868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20091826 - 20091862
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  20091826 aattttcttgataaaatatttcttgatatatagcatt 20091862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35353081 - 35353045
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  35353081 aattttcttgaaaaaatctttcttgatatatagcatt 35353045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38017011 - 38016979
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatag 33  Q
    |||||||||||||||||||||||| ||||||||    
T  38017011 aattttcttgataaaatctttcttgatatatag 38016979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 35444598 - 35444555
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactctat 44  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||    
T  35444598 aattttcttgaaaaaatctttcttaatatatagcattgctctat 35444555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15577875 - 15577917
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactcta 43  Q
    |||||||||||||||||||||||| |||||||||||| |||||    
T  15577875 aattttcttgataaaatctttcttgatatatagcattgctcta 15577917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 15329313 - 15329272
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  15329313 aattttcttgataaaatctttcttgatatatagcattgctct 15329272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 45637752 - 45637711
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  45637752 aattttcttgataaaatctttcttgatatatagcattgctct 45637711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3962019 - 3961983
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  3962019 aattttcttgataaaatctttcttgatatatagcatt 3961983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4974760 - 4974796
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  4974760 aattttcttgataaaatctttcttgatatatagcatt 4974796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24395012 - 24394976
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  24395012 aattttcttgataaaatctttcttgatatatagcatt 24394976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42611851 - 42611815
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  42611851 aattttcttgataaaatctttcttgatatatagcatt 42611815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 48880952 - 48880988
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  48880952 aattttcttgataaaatctttcttgatatatagcatt 48880988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20010122 - 20010158
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  20010122 aatttttttgataaaatctttcttgatatatagcatt 20010158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29737179 - 29737139
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactc 41  Q
    ||||||||| | |||||||||||| ||||||||||||||||    
T  29737179 aattttcttaaaaaaatctttcttgatatatagcattactc 29737139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34482875 - 34482839
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  34482875 aattttcttaataaaatctttcttgatatatagcatt 34482839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3362818 - 3362775
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactctat 44  Q
    |||||||||||||||||||||||| |||||||||||| ||||||    
T  3362818 aattttcttgataaaatctttcttgatatatagcattgctctat 3362775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 38899751 - 38899794
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactctat 44  Q
    |||||||||||||||||||||||| |||||||||||| ||||||    
T  38899751 aattttcttgataaaatctttcttgatatatagcattgctctat 38899794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2477676 - 2477635
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  2477676 aattttcttgataaaatctttcttgatatatagcattgctct 2477635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6043536 - 6043577
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  6043536 aattttcttgataaaatctttcttgatatatagcattgctct 6043577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11361156 - 11361192
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  11361156 aattttcttgataaaatctttcttgatatatagcatt 11361192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12850841 - 12850805
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  12850841 aattttcttgataaaatctttcttgatatatagcatt 12850805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 13664679 - 13664640
Alignment:
Q  4 tttcttgataaaatctttcttaatatatagcattactcta 43  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  13664679 tttcttgataaaatctttcttaatatataacattgctcta 13664640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 27481864 - 27481829
Alignment:
Q  3 ttttcttgataaaatctttcttaatatatagcatta 38  Q
    |||||||||||||||||||||||||| |||||||||    
T  27481864 ttttcttgataaaatctttcttaatacatagcatta 27481829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4892242 - 4892201
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||||| |||||||||||| |||||||||||| ||||    
T  4892242 aattttcttgaaaaaatctttcttgatatatagcattgctct 4892201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8145415 - 8145374
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| ||||||| |||| ||||    
T  8145415 aattttcttgataaaatctttcttgatatataacattcctct 8145374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14138708 - 14138667
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| ||||||| |||| ||||    
T  14138708 aattttcttgataaaatctttcttgatatataacattgctct 14138667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37321818 - 37321855
Alignment:
Q  1 aattttcttgataaaatctttctta-atatatagcatt 37  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  37321818 aattttcttgataaaatctttcttagatatatagcatt 37321855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25398278 - 25398242
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  25398278 aattttcttgaaaaaatctttcttgatatatagcatt 25398242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33584354 - 33584390
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  33584354 aattttcttgaaaaaatctttcttgatatatagcatt 33584390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 24343585 - 24343546
Alignment:
Q  3 ttttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  24343585 ttttcttgataaaatctttcttaatatatagcattgctct 24343546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 42297393 - 42297350
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactctat 44  Q
    |||||||||||||||||||||||| |||||||||||| ||||||    
T  42297393 aattttcttgataaaatctttcttgatatatagcattgctctat 42297350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 22426369 - 22426411
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactcta 43  Q
    |||||||||||||||||||||||||||||||| |||| |||||    
T  22426369 aattttcttgataaaatctttcttaatatataacattgctcta 22426411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2754757 - 2754716
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  2754757 aattttcttgataaaatctttcttgatatatagcattgctct 2754716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3574552 - 3574593
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  3574552 aattttcttgataaaatctttcttgatatatagcattgctct 3574593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11347308 - 11347267
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  11347308 aattttcttgataaaatctttcttgatatatagcattgctct 11347267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3456104 - 3456068
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  3456104 aattttcttgataaaatctttcttgatatatagcatt 3456068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6041924 - 6041888
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  6041924 aattttcttgataaaatctttcttgatatatagcatt 6041888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19650925 - 19650961
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  19650925 aattttcttgataaaatctttcttaatatataacatt 19650961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37217078 - 37217114
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  37217078 aattttcttgataaaatctttcttgatatatagcatt 37217114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48160945 - 48160909
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  48160945 aattttcttgataaaatctttcttgatatatagcatt 48160909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3137439 - 3137480
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||||| |||||||||||| |||||||||||| ||||    
T  3137439 aattttcttgaaaaaatctttcttgatatatagcattgctct 3137480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33113833 - 33113792
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||| |||||||||||||| |||||||||||| ||||    
T  33113833 aattttcttaataaaatctttcttgatatatagcattgctct 33113792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34482935 - 34482976
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||||| |||||||||||| |||||||||||| ||||    
T  34482935 aattttcttgaaaaaatctttcttgatatatagcattgctct 34482976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36865052 - 36865093
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||| |||||||||| |||||||||||||||| ||||    
T  36865052 aattttcttaataaaatcttccttaatatatagcattgctct 36865093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 40327912 - 40327879
Alignment:
Q  4 tttcttgataaaatctttcttaatatatagcatt 37  Q
    ||||||||||||||||||||| ||||||||||||    
T  40327912 tttcttgataaaatctttcttgatatatagcatt 40327879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8320609 - 8320645
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  8320609 aattttcttgataaaatctttcttgatatataacatt 8320645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30385051 - 30385015
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  30385051 aattttcttgataaaatctttcttgataaatagcatt 30385015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 41224271 - 41224239
Alignment:
Q  3 ttttcttgataaaatctttcttaatatatagca 35  Q
    ||||||||| |||||||||||||||||||||||    
T  41224271 ttttcttgagaaaatctttcttaatatatagca 41224239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 35160797 - 35160754
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactctat 44  Q
    |||||||||||||||||||||||| |||||||||||| ||||||    
T  35160797 aattttcttgataaaatctttcttgatatatagcattgctctat 35160754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10661927 - 10661891
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  10661927 aattttcttgataaaatctttcttgatatatagcatt 10661891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21936121 - 21936085
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  21936121 aattttcttgataaaatctttcttgatatatagcatt 21936085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7475533 - 7475575
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactcta 43  Q
    ||||||||||| |||||||||||| |||||||||||| |||||    
T  7475533 aattttcttgaaaaaatctttcttgatatatagcattgctcta 7475575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 9293604 - 9293642
Alignment:
Q  4 tttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  9293604 tttcttgataaaatctttcttgatatatagcattgctct 9293642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 9723442 - 9723409
Alignment:
Q  4 tttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||| |||||||||||||||||||||||||||    
T  9723442 tttcttaataaaatctttcttaatatatagcatt 9723409  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13354886 - 13354845
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| ||||||| |||| ||||    
T  13354886 aattttcttgataaaatctttcttgatatataacattgctct 13354845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23268087 - 23268128
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||||| |||||||||||| |||||||||||| ||||    
T  23268087 aattttcttgaaaaaatctttcttgatatatagcattgctct 23268128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 14941394 - 14941434
Alignment:
Q  4 tttcttgataaaatctttcttaatatatagcattactctat 44  Q
    |||||| |||||||||||||| |||||||||||| ||||||    
T  14941394 tttcttaataaaatctttcttgatatatagcattgctctat 14941434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33380247 - 33380211
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  33380247 aattttcttgaaaaaatctttcttgatatatagcatt 33380211  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 31078844 - 31078886
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactcta 43  Q
    |||||||||||||||||||||||| |||||||||||| |||||    
T  31078844 aattttcttgataaaatctttcttgatatatagcattgctcta 31078886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4751486 - 4751445
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  4751486 aattttcttgataaaatctttcttgatatatagcattgctct 4751445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10442814 - 10442855
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  10442814 aattttcttgataaaatctttcttgatatatagcattgctct 10442855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 33530715 - 33530756
Alignment:
Q  3 ttttcttgataaaatctttcttaatatatagcattactctat 44  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  33530715 ttttcttgataaaatctttcttgatatatagcattgctctat 33530756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 50156603 - 50156644
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||||| ||||||||||||||||||||||||| ||||    
T  50156603 aattttcttgaaaaaatctttcttaatatatagcattgctct 50156644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2624877 - 2624841
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  2624877 aattttcttgataaaatctttcttgatatatagcatt 2624841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7745137 - 7745173
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  7745137 aattttcttgataaaatctttcttgatatatagcatt 7745173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22199301 - 22199265
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  22199301 aattttcttgataaaatctttcttgatatatagcatt 22199265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36072987 - 36072951
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  36072987 aattttcttgataaaatctttcttgatatatagcatt 36072951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 49387913 - 49387949
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  49387913 aattttcttgataaaatctttcttgatatatagcatt 49387949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21802347 - 21802388
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||||||||||| |||||| |||||||||||| ||||    
T  21802347 aattttcttgataaaatatttcttgatatatagcattgctct 21802388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24128279 - 24128238
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||||| |||||||||||| |||||||||||| ||||    
T  24128279 aattttcttgaaaaaatctttcttgatatatagcattgctct 24128238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 36073390 - 36073349
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||||| |||||||||||| |||||||||||| ||||    
T  36073390 aattttcttgaaaaaatctttcttgatatatagcattcctct 36073349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 44893241 - 44893282
Alignment:
Q  3 ttttcttgataaaatctttcttaatatatagcattactctat 44  Q
    |||| |||| ||||||||||||||||||||||||| ||||||    
T  44893241 tttttttgaaaaaatctttcttaatatatagcattgctctat 44893282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 47290106 - 47290065
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||||| |||||||||||| |||||||||||| ||||    
T  47290106 aattttcttgaaaaaatctttcttgatatatagcattgctct 47290065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6127315 - 6127274
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  6127315 aattttcttgataaaatctttcttgatatatagcattgctct 6127274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23291109 - 23291150
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  23291109 aattttcttgataaaatctttcttgatatatagcattgctct 23291150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28675188 - 28675147
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  28675188 aattttcttgataaaatctttcttgatatatagcattgctct 28675147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33695352 - 33695393
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  33695352 aattttcttgataaaatctttcttgatatatagcattgctct 33695393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33696736 - 33696695
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  33696736 aattttcttgataaaatctttcttgatatatagcattgctct 33696695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17705490 - 17705526
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  17705490 aattttcttgataaaatctttcttgatatatagcatt 17705526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18365598 - 18365639
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||| ||||||||||||||||| |||||||||||| ||||    
T  18365598 aatttttttgataaaatctttcttgatatatagcattgctct 18365639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18370862 - 18370903
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||| ||||||||||||||||| |||||||||||| ||||    
T  18370862 aatttttttgataaaatctttcttgatatatagcattgctct 18370903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17176046 - 17176082
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  17176046 aattttattgataaaatctttcttgatatatagcatt 17176082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25986970 - 25986934
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  25986970 aattttcttaataaaatctttcttgatatatagcatt 25986934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11661 - 11625
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  11661 aattttcttgataaaatctttcttgatatatagcatt 11625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12882 - 12841
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||||| |||||||||||| |||||||||||| ||||    
T  12882 aattttcttgaaaaaatctttcttgatatatagcattgctct 12841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4436 - 4395
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    ||||||||||| |||||||||||| |||||||||||| ||||    
T  4436 aattttcttgaaaaaatctttcttgatatatagcattgctct 4395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41051 - 41010
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcattactct 42  Q
    |||||| ||||||||||||||||| |||||||||||| ||||    
T  41051 aatttttttgataaaatctttcttgatatatagcattgctct 41010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3108 - 3072
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  3108 aattttattgataaaatctttcttgatatatagcatt 3072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 47890 - 47854
Alignment:
Q  1 aattttcttgataaaatctttcttaatatatagcatt 37  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  47890 aattttcttgataaaatctttcttgataaatagcatt 47854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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