View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5715_low_12 (Length: 249)
Name: NF5715_low_12
Description: NF5715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5715_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 13704093 - 13704323
Alignment:
| Q |
1 |
cttataggaaaatttgtttagtgggataatcggaagtgaaaaaggcaacttaaaaccatatattctttttgtgctccatagacatatataatgatgtcat |
100 |
Q |
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| T |
13704093 |
cttataggaaaatttgtttagtggtataatcggaagtgaaaaaggcaacttaaaaccatatattctttttgtgctccatagacatatataatgatgtcat |
13704192 |
T |
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| Q |
101 |
tactatttcaatcgatgatcaacaaagaagcttgcatgttaaagaatcaagaacgacatttgataaagagaaagatgatgaaccaactttgaatatgccc |
200 |
Q |
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| T |
13704193 |
tactatttcactcgatgatcagcaaagaagcttgcatgataaagaatgaagaacaaaatttgataaagagaaagatgatgaaccaactttgaatatgccc |
13704292 |
T |
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| Q |
201 |
aactatagaaagagttacaggcgtggaatag |
231 |
Q |
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| T |
13704293 |
aactatagaaagagttacaggcgtggaatag |
13704323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 14782070 - 14782126
Alignment:
| Q |
10 |
aaatttgtttagtgggataatcggaagtgaaaaaggcaacttaaaaccatatattct |
66 |
Q |
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| T |
14782070 |
aaatttgtttaagggtataatagaaagtgaaaaaggcagcttaaaaccatgtattct |
14782126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 15232103 - 15232159
Alignment:
| Q |
10 |
aaatttgtttagtgggataatcggaagtgaaaaaggcaacttaaaaccatatattct |
66 |
Q |
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| T |
15232103 |
aaatttgtttaagggtataatagaaagtgaaaaaggcagcttaaaaccatgtattct |
15232159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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