View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5715_low_16 (Length: 225)
Name: NF5715_low_16
Description: NF5715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5715_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 23406272 - 23406466
Alignment:
| Q |
14 |
cataggaatgatgcagatataatcaaggagcttaatttgatactctcaaaacttccacaccactttcaattcaacgttcttattttcaaaagtttcgtta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23406272 |
cataggaatgatgcagatataatcaaggagcttaatttgatactctcaaaactttcacaccactttcaattcaacgttcttattttcaaaagtttcgtta |
23406371 |
T |
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| Q |
114 |
aacctatattttctctatttgttacatttttcatgcttgctattgcaacaactaatttgatctctttaaatccttaaaaatattttgatctattt |
208 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23406372 |
aacctatattttctttatttgttacatttttcatgcttgctattgcaacaactaatttgatctctttaaatccctaaaaatattttgatctattt |
23406466 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 34163412 - 34163218
Alignment:
| Q |
14 |
cataggaatgatgcagatataatcaaggagcttaatttgatactctcaaaacttccacaccactttcaattcaacgttcttattttcaaaagtttcgtta |
113 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34163412 |
cataggaatgatgaagatataatcaaggagcttaatttgatactctcaaaacttccacaccactttcaattcaacgttcttattttcaaaagtttcgtta |
34163313 |
T |
|
| Q |
114 |
aacctatattttctctatttgttacatttttcatgcttgctattgcaacaactaatttgatctctttaaatccttaaaaatattttgatctattt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34163312 |
aacctatattttctctatttgttacatttttcatgcttgttattgcaacaactaatttgatctctttaaatccctaaaaatattttgatctattt |
34163218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 16999885 - 17000077
Alignment:
| Q |
16 |
taggaatgatgcagatataatcaaggagcttaatttgatactctcaaaacttccacaccactttcaattcaacgttcttattttcaaaagtttcgttaaa |
115 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
16999885 |
taggaatgatgaatatataatcaaggagcttaatttgatactctcaaaatttccacaccactttcaattcaacgttcttattttcaaaagttttgttaaa |
16999984 |
T |
|
| Q |
116 |
cctatattttctctatttgttacatttttcatgcttgctattgcaacaactaatttgatctctttaaatccttaaaaatattttgatctattt |
208 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16999985 |
cctattttttctctatttgttacatttttcatgcttgctattgcaacaactaatttgatctctttaaatccctaaaaatattttgatctattt |
17000077 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 4065412 - 4065220
Alignment:
| Q |
16 |
taggaatgatgcagatataatcaaggagcttaatttgatactctcaaaacttccacaccactttcaattcaacgttcttattttcaaaagtttcgttaaa |
115 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4065412 |
taggaatgatgaagatataatcaaggagcttaatttgatactctcaaaatttccacaccactttcaattcaacgttcttattttcaaaagtttcgttaaa |
4065313 |
T |
|
| Q |
116 |
cctatattttctctatttgttacatttttcatgcttgctattgcaacaactaatttgatctctttaaatccttaaaaatattttgatctattt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
4065312 |
cctatattttctctatttgttacatttttcatgcttgctattgcaacaactaatttgatctctttaaatccctaaaaatattttgatctattt |
4065220 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 16310068 - 16310260
Alignment:
| Q |
16 |
taggaatgatgcagatataatcaaggagcttaatttgatactctcaaaacttccacaccactttcaattcaacgttcttattttcaaaagtttcgttaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16310068 |
taggaatgatgcagatataatcaaggagcttaatttgatactctcaaaacttccacaccactttcaattcaacgttcttattttcaaaagtttcgttaaa |
16310167 |
T |
|
| Q |
116 |
cctatattttctctatttgttacatttttcatgcttgctattgcaacaactaatttgatctctttaaatccttaaaaatattttgatctattt |
208 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
16310168 |
cctatattttctctttttgttacatttttcatgcttgctattgcaactactaattcgatctctttaaatccctaaaaatattttgatctattt |
16310260 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 37248031 - 37248219
Alignment:
| Q |
20 |
aatgatgcagatataatcaaggagcttaatttgatactctcaaaacttccacaccactttcaattcaacgttcttattttcaaaagtttcgttaaaccta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
37248031 |
aatgatgcagatataatcaaggagcttaatttgatattctcaaaacttccacaccactttcaatttaacgtttttattttcaaaagtttcgttaaaccta |
37248130 |
T |
|
| Q |
120 |
tattttctctatttgttacatttttcatgcttgctattgcaacaactaatttgatctctttaaatccttaaaaatattttgatctattt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| |
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| T |
37248131 |
tattttctctatttgttacatttttcatgcttgctattgcaacaactaatttgatatctttaaatccctaaaaatatttttatctattt |
37248219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 55053311 - 55053122
Alignment:
| Q |
16 |
taggaatgatgcagatataatcaaggagcttaatttgatactctcaaaacttccacaccactttcaattcaacgttcttattttcaaaagtttcgttaaa |
115 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55053311 |
taggaatgatgaagatataattaaggagcttaatttgatactctcaaaacttccacaccactttcaattcaacgttcttattttcaaaagtttcgttaaa |
55053212 |
T |
|
| Q |
116 |
cctatattttctctatttgttacatttttcatgcttgctattgcaacaactaatttgatctctttaaatccttaaaaatattttgatcta |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
55053211 |
cctatattttctctatttgttacatttttcatgcttgctattgcaacaactaatttgatctctttaaatttctaaaaatattttgatcta |
55053122 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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