View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5715_low_3 (Length: 406)
Name: NF5715_low_3
Description: NF5715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5715_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 13133897 - 13134287
Alignment:
| Q |
1 |
caatctaatattagtatataaaatatgtaaagttaattaacaaaatcagcttacttcagagttgagactcataactttggaaatatttcaaaaacacaca |
100 |
Q |
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| T |
13133897 |
caatctaatattagtatataaaatatgtaaagttaattaacaaaatcagcttacttcagagttgagactcataactttggaaatatttcaaaaacacaca |
13133996 |
T |
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| Q |
101 |
tgaaagtttctttactttcttcaacttgcaccttttctctagttgatacactctcttaagtgtttaaataatattttccacgcctactttcctttcccgc |
200 |
Q |
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| T |
13133997 |
tgaaagtttctttactttcttcaacttgcaccttttctctagttgatacactctctaaagtgtttaaataata--tcccacgcctactttcctttc---- |
13134090 |
T |
|
| Q |
201 |
aacacttcaccaccctttctatttcacttcat----tctattcatatgaatcatatcccataagttattgtttatccttccttaatttcctcaactacac |
296 |
Q |
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| T |
13134091 |
----ctt-----tcctttctatttcacttcattctatctattcatatgaatcatatcccataagttatagtttatccttccttaatttcctcaactacac |
13134181 |
T |
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| Q |
297 |
acacatacatatttgagtattagtattttaagaagaacaccaccaccagcatcatcagaacaagcaaagttataagagctt---aaaggtatatatgatg |
393 |
Q |
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| T |
13134182 |
acacatacatatttgagtagtagtattttaagaagaacaccaccaccagcatcatcagaacaagcaaagttataagagcttatcaaaggtatatatgatg |
13134281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 210 - 374
Target Start/End: Complemental strand, 30237512 - 30237352
Alignment:
| Q |
210 |
ccaccctttctatttcacttcattctattcatatgaatcatatcccataagttattgtttatccttccttaatttcctcaactacacacacatacatatt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||| |
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| T |
30237512 |
ccaccctttctatttcacttcattctattcatatgaaccatatcccataagttatatttaatccttccttaatttcctcaactacacacacatccatata |
30237413 |
T |
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| Q |
310 |
tgagtattagtattttaagaagaacaccaccaccagcatcatcagaacaagcaaagttataagag |
374 |
Q |
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| T |
30237412 |
tgagtagtagtattttaagaagaataacaccactgg---catcagaacaagc-aagttataagag |
30237352 |
T |
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