View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5715_low_4 (Length: 359)
Name: NF5715_low_4
Description: NF5715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5715_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 6 - 349
Target Start/End: Original strand, 16437782 - 16438114
Alignment:
| Q |
6 |
acttgcatcggtcggtatc-tgagtttgaagtacttatttgaccaaaaggagttatgcatgaggcaaacaagatggatgaatttcataaatgattacgat |
104 |
Q |
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| T |
16437782 |
acttgcatcggtcggtatcctgagtttaaagtacttatttgaccaaaaggagttatgcatgaggcaaacaagatggatgaatttcataaatgattacaat |
16437881 |
T |
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| Q |
105 |
tttgcagtacaatatcattccggaaagacaaaaatagttgcaaatgctgagtagaaatattacatatgacaacaatgctttgaatagttgcaaatactct |
204 |
Q |
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| T |
16437882 |
tttgcagtacaatatcattccgaaaagacaaaaatagttgcaaatgctgagtagaaatattacatatgacaacaatgctttgaatagttgcaaatactct |
16437981 |
T |
|
| Q |
205 |
atctgtgaacagagcttggtcaatgnnnnnnngtcaagttgatattatttgttttattgctcgacctttgtgtcaaatttaatataatgttttatattaa |
304 |
Q |
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| T |
16437982 |
atctgtgaacagagcttggtcaatgtatttttgtcaagttgatattatttgttttattgctcgacctttgtgtcaaa------------ttttatattaa |
16438069 |
T |
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| Q |
305 |
aatgtgagtcttcctcacttaatttgttttattgctcaacctttg |
349 |
Q |
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| T |
16438070 |
aatgtgagtcttcctcacttaatttgctttattgctcaacctttg |
16438114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 288
Target Start/End: Complemental strand, 16420050 - 16420002
Alignment:
| Q |
240 |
aagttgatattatttgttttattgctcgacctttgtgtcaaatttaata |
288 |
Q |
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| T |
16420050 |
aagttgatattatttgttttattgctcgacctttgtgtcaaaattaata |
16420002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 49929077 - 49929200
Alignment:
| Q |
24 |
ctgagtttgaagtacttatttgaccaaaaggagttatgcatgaggcaaacaagatggatgaatttcataaatgattacgattttgcagtacaatatcatt |
123 |
Q |
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||||||| ||||||||| ||||||||||| |||||| || |||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
49929077 |
ctgagttggaagtacttgtttgaccaaaatgagttaaacacgaggcaaagaagatggatgaatttcataaatgattatgattttgcactacaatatcatc |
49929176 |
T |
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| Q |
124 |
ccggaaagacaaaaatagttgcaa |
147 |
Q |
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| |||| |||| |||||||||| |
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| T |
49929177 |
tggtaaaggcaaatatagttgcaa |
49929200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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