View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5715_low_5 (Length: 346)
Name: NF5715_low_5
Description: NF5715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5715_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 8712661 - 8712866
Alignment:
| Q |
20 |
gatcatgggtttagcggttgcaagaaaagatctttcaaggataggtggacattttcgatcttaattcttgcatatccaagattacaaaatctgtcaaaaa |
119 |
Q |
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| T |
8712661 |
gatcatgggtttagcggttgcaagaaaagatctttcaaggataggtggacattttcgatctt----cttgcatatccaagattacaaaatctgtcaaaaa |
8712756 |
T |
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| Q |
120 |
gataacttagtttacttttaccatcaagaattctactatgccataaggaaatttgattgtaccatctgccaaggtgagatttatgtttgatggtttcatc |
219 |
Q |
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| T |
8712757 |
gataacttagtttacttttaccatcaagaattctactatgccataaggaaatttgattgtaccatctgccaaggtgagatttatgtttggtggtttcatc |
8712856 |
T |
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| Q |
220 |
ttcacctttt |
229 |
Q |
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|||||||||| |
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| T |
8712857 |
ttcacctttt |
8712866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 9064548 - 9064753
Alignment:
| Q |
20 |
gatcatgggtttagcggttgcaagaaaagatctttcaaggataggtggacattttcgatcttaattcttgcatatccaagattacaaaatctgtcaaaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9064548 |
gatcatgggtttagcggttgcaagaaaagatctttcaaggataggtggacattttcgatctt----cttgcatatccaagattacaaaatctgtcaaaaa |
9064643 |
T |
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| Q |
120 |
gataacttagtttacttttaccatcaagaattctactatgccataaggaaatttgattgtaccatctgccaaggtgagatttatgtttgatggtttcatc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9064644 |
gataacttagtttacttttaccatcaagaattctactatgccataaggaaatttgattgtaccatctgccaaggtgagatttatgtttggtggtttcatc |
9064743 |
T |
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| Q |
220 |
ttcacctttt |
229 |
Q |
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|||||||||| |
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| T |
9064744 |
ttcacctttt |
9064753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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