View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5715_low_9 (Length: 273)
Name: NF5715_low_9
Description: NF5715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5715_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 10112649 - 10112908
Alignment:
| Q |
1 |
tgaggtttttaaatttttccgctcatttttagaatccaaaatttcaaatccctcaaatatgcttataaaattgaacttcatatgttgacatttcagttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10112649 |
tgaggtttttaaatttttccgctcatttttagaatccaaaatttcaaatccctcaaatatgcttataaaattgaacttcatatgttgacatttcagttat |
10112748 |
T |
|
| Q |
101 |
ggatgcaaatattgacataaatgttccgttagttgcaatagatttaaattttccttttttcaactatgaggcaaattctccaaattcactagacttgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10112749 |
ggatgcaaatattgacataaatgttccgttagttgcaatagatttaaattttccttttttcaactatgaggcaaattctccaaattcactagacttgaat |
10112848 |
T |
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| Q |
201 |
gaaccacctcttaatgaagatgatgttcctctatttctatctagtgatccaactgaagaa |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10112849 |
gaaccacctcttaatgaagatgatgttcctctatttctatctagtgatccaactgaagaa |
10112908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 33023128 - 33022869
Alignment:
| Q |
1 |
tgaggtttttaaatttttccgctcatttttagaatccaaaatttcaaatccctcaaatatgcttataaaattgaacttcatatgttgacatttcagttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33023128 |
tgaggtttttaaatttttccgctcatttttagaatccaaaatttcaaatccctcaaatatgcttataaaattgaacttcatatgttgacatttcagttat |
33023029 |
T |
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| Q |
101 |
ggatgcaaatattgacataaatgttccgttagttgcaatagatttaaattttccttttttcaactatgaggcaaattctccaaattcactagacttgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33023028 |
ggatgcaaatattgacataaatgttccgttagttgcaatagatttaaattttccttttttcaactatgaggcaaattctccaaattcactagacttgaat |
33022929 |
T |
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| Q |
201 |
gaaccacctcttaatgaagatgatgttcctctatttctatctagtgatccaactgaagaa |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33022928 |
gaaccacctcttaatgaagatgatgttcctctatttctatctagtgatccaactgaagaa |
33022869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 27027356 - 27027097
Alignment:
| Q |
1 |
tgaggtttttaaatttttccgctcatttttagaatccaaaatttcaaatccctcaaatatgcttataaaattgaacttcatatgttgacatttcagttat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27027356 |
tgaggtttttaaatttttccgctcatttttagaatccaaaatttcaaatccctcaaatatgcttataaaattgaacttcatatgttgacatttcaattat |
27027257 |
T |
|
| Q |
101 |
ggatgcaaatattgacataaatgttccgttagttgcaatagatttaaattttccttttttcaactatgaggcaaattctccaaattcactagacttgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27027256 |
ggatgcaaatattgacataaatgttccgttagttgcaatagatttaaattttccttttttcaactatgaggcaaattctccaaattcactagacttgaat |
27027157 |
T |
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| Q |
201 |
gaaccacctcttaatgaagatgatgttcctctatttctatctagtgatccaactgaagaa |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27027156 |
gaaccacctcttaatgaagatgatgttcctctatttctatctagtgatccaactgaagaa |
27027097 |
T |
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