View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5716_low_1 (Length: 397)
Name: NF5716_low_1
Description: NF5716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5716_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 6865538 - 6865924
Alignment:
| Q |
1 |
gaatgaaaatgaagatcgatcatatgaatattaaaaattctaagattgaattataagcttatagattagtgttgttctggtctgtttttatattttgtca |
100 |
Q |
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| T |
6865538 |
gaatgaaaatgaagatcgatcatatgaatattaaaaattctaagattgaattataagcttatagattagtgttgttctggtctgtttttatattttatca |
6865637 |
T |
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| Q |
101 |
atccagtgaaaaataaaaagaagagggtttgattcaaaatgtatttaaacaaaagaagttaaacaaatttaagacatcaacacttaccaaatatttctgc |
200 |
Q |
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| T |
6865638 |
atccagtgaaaaataaaaagaagagggtttgattcaaaatctatttaaacaaaagaagttaaacaaatttaagacatcaacacttaccaaatatttgtgc |
6865737 |
T |
|
| Q |
201 |
atgaatgcaatgcgaaagaagtttcgcaccataataacaattgttgtcgagtagggtgaaccatcgagtcttggaaaaaagaaatctagttacttttttg |
300 |
Q |
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| T |
6865738 |
atgaatgcaatgcgaaagaagtttagcaccataataacaattgttgtcgagtagcgtgaaccatcgagtcttggaaaaaagaaatctagtcacttttttg |
6865837 |
T |
|
| Q |
301 |
tgtcccttggttgcggctagaagtactggaatgtcacccttatcgtcatcagctttgattttaatggttagtagatcatttcctcct |
387 |
Q |
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| T |
6865838 |
tgtcccttggttgcggctagaagtactggaatgtcacccttatcgtcatcagctttgattttcatggttagtagatcatttcctcct |
6865924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 136 - 386
Target Start/End: Original strand, 6132947 - 6133198
Alignment:
| Q |
136 |
aaaatgtatttaaacaaaagaa-gttaaacaaatttaagacatcaacacttaccaaatatttctgcatgaatgcaatgcgaaagaagtttcgcaccataa |
234 |
Q |
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| T |
6132947 |
aaaaagtatttaaacaaaagaatgttaaatgaatttcaaacatcaacacttaccaaatatttctgcatggatgcaatatgaaagaagtttagcaccataa |
6133046 |
T |
|
| Q |
235 |
taacaattgttgtcgagtagggtgaaccatcgagtcttggaaaaaagaaatctagttacttttttgtgtcccttggttgcggctagaagtactggaatgt |
334 |
Q |
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||| |||||||||| || ||||||||||||||| ||||||| |||||||| || | || |||||| ||||| | |||||| |||||||||||||||| |
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| T |
6133047 |
taataattgttgtcagttaaagtgaaccatcgagtcatggaaaatagaaatctcgtcatttctttgtggccctttgctgcggcaagaagtactggaatgt |
6133146 |
T |
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| Q |
335 |
cacccttatcgtcatcagctttgattttaatggttagtagatcatttcctcc |
386 |
Q |
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| T |
6133147 |
cacctttaccatcatcagcttttattttcattgtcagtagatcatttcctcc |
6133198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 174 - 387
Target Start/End: Complemental strand, 6088684 - 6088471
Alignment:
| Q |
174 |
acatcaacacttaccaaatatttctgcatgaatgcaatgcgaaagaagtttcgcaccataataacaattgttgtcgagtagggtgaaccatcgagtcttg |
273 |
Q |
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| T |
6088684 |
acatgaacgcttaccatataattcggcatggatgcagtgtgaaagaagtttagcaccataaaaacaatcgttctcctctagggtggaccatggagttttg |
6088585 |
T |
|
| Q |
274 |
gaaaaaagaaatctagttacttttttgtgtcccttggttgcggctagaagtactggaatgtcacccttatcgtcatcagctttgattttaatggttagta |
373 |
Q |
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| T |
6088584 |
gaaaaaagaaatctcgtcatttctttgtggccattggttgcggctagaagtactggaatgtcacctttattatcattagctttgattttcatggttagaa |
6088485 |
T |
|
| Q |
374 |
gatcatttcctcct |
387 |
Q |
| |
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||||| ||||||| |
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| T |
6088484 |
gatcagctcctcct |
6088471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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