View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5716_low_4 (Length: 251)
Name: NF5716_low_4
Description: NF5716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5716_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 1994612 - 1994846
Alignment:
| Q |
1 |
aagttatataagaaataaattattgaacacttgtaacttgattatgatgaatctttgatttatctatgatattgtgggtttaatataagaaattaactaa |
100 |
Q |
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| T |
1994612 |
aagttttataagaaataaattattgaacacttgtgacttgattatgatgaatctttgatttatctatgatattgtgggtttaatataagaaattaactaa |
1994711 |
T |
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| Q |
101 |
ccttcttcaatccaggtatagtggcagatagtgctatgaacctctcactaagaacttgtctcctttttctctcagccataatgtgatcttgtatctctga |
200 |
Q |
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| T |
1994712 |
ccttcttcaatccaggtatagtggcagatagtgctatgaacctctcactaagaacttgtctcctttttctctcagccataatgtgatcttgtatctctga |
1994811 |
T |
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| Q |
201 |
agagcttctaagattcttggttcttttcttaattg |
235 |
Q |
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| T |
1994812 |
agagcttctaagattcttggttcttttcttaattg |
1994846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 59 - 234
Target Start/End: Original strand, 1987708 - 1987878
Alignment:
| Q |
59 |
tttatctatgatattgtgggtttaatataagaaattaactaaccttcttcaatccaggtatagtggcagatagtgctatgaacctctcactaagaacttg |
158 |
Q |
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| T |
1987708 |
tttatcaatgatattgtgggttt-gtataaga----aactgaccttcttcaatccaggtatagtggcagacagtgctatgaacctttcagtaagaacttg |
1987802 |
T |
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| Q |
159 |
tctcctttttctctcagccataatgtgatcttgtatctctgaagagcttctaagattcttggttcttttcttaatt |
234 |
Q |
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| T |
1987803 |
tctcctttttctctcagccataatgtgatcttgcatctcacaagagcttctaagattcttagttcttttcttaatt |
1987878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 188
Target Start/End: Complemental strand, 45130793 - 45130763
Alignment:
| Q |
158 |
gtctcctttttctctcagccataatgtgatc |
188 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
45130793 |
gtctcctttttctctcagccataatgtgatc |
45130763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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