View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5716_low_5 (Length: 243)
Name: NF5716_low_5
Description: NF5716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5716_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 35902096 - 35901868
Alignment:
| Q |
1 |
aatcaatccttccatatctccaaaggatgtaagaactataacaaacactatcaaaaaatttatcaactattgctgt-gattcagtatttgaaaatgagac |
99 |
Q |
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| T |
35902096 |
aatcaatccttccatatctccaaaggatgtaagaactacaacaaacactatcaaaaaatttatcaactattgctgtagactcagtatttgaaaatgagac |
35901997 |
T |
|
| Q |
100 |
ggtccagttaattgtcaaagaaatcatatgatttgtagtaactacacaaatagtcaccaactcacctgaactcaaatgcaaagtccatatgattttaaag |
199 |
Q |
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||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35901996 |
agtccagttagttgtcaaagaaatcatatgacttgcagtaactacacaaatagtcaccaactcacctgcactcaaatgcaaagtccatatgattttaaag |
35901897 |
T |
|
| Q |
200 |
agaaagttaaaaaatcatcaataaatatt |
228 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
35901896 |
agaaagttaaaaaatcatcaataaatatt |
35901868 |
T |
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