View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5717-Insertion-1 (Length: 820)
Name: NF5717-Insertion-1
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717-Insertion-1 |
 | |
|
| [»] scaffold0227 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 689; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 689; E-Value: 0
Query Start/End: Original strand, 8 - 801
Target Start/End: Complemental strand, 35742410 - 35741603
Alignment:
| Q |
8 |
atgtaaagaatttgaatattttgattttgctcctcctactcttgaagtcttattgatagaatttaatccaaagatgaagtcaatttgtctcaagaaagca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35742410 |
atgtaaagaatttgaatattttgattttgctcctcctactcttgaagtcttattgatagaatttaatccaaagatgaagtcaatttgtctcaagaaagca |
35742311 |
T |
|
| Q |
108 |
aataatctgattgatcttacactcaaagctactgagagctgcacatttggtttgatcaaaagtttgccaaaaaacattcaaaggctttctattagttcac |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35742310 |
aataatctgattgatcttgcactcaaagctactgagagctgcacatttggtttgatcaaaagtttgccaaaaaacattcaaaggctttctattagttcac |
35742211 |
T |
|
| Q |
208 |
gacacggtatttacaaggttagaaaacatcatcactaatattttgattttacaaggttaagattctatc---tcacatgttagtttggtatcaaacaaag |
304 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35742210 |
gacgcggtatttacaaggttagaaaacatcatcactaatattttgattttacaaggttaagattctatctgatcacatgttagtttggtatcaaacaaag |
35742111 |
T |
|
| Q |
305 |
cata----atattctgttgacatatatggacttgttcaaatt--tatatttgactttttatcaccacttctatcttgcctggcctttcggtttgttcaaa |
398 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35742110 |
cataatatatattctgttgacatatatggacttgttcaaatttatatatttgactttttatcaccacttctatcttgcctggcctttcggtttgttcaaa |
35742011 |
T |
|
| Q |
399 |
ttttgattga-ggtccaatccaatatttatactgaaagttattatttttcacttttaagtgtcgtttatttctgcatatctcatatatag-nnnnnnnca |
496 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || |
|
|
| T |
35742010 |
ttttgattgatggtccaatccaatatttatactgaaagttattatttttcacttttaagtg-cgtttgtttctgcatatctcatatatagttttttttca |
35741912 |
T |
|
| Q |
497 |
tatgc----atatatagatgcagtatgcaaatatcattcatccaacgctgctaaaaagctcgttcagctccatgaagtatctgaaattgggtaatgtgaa |
592 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35741911 |
tatgcatatatatatagatgcagtatgcaaatatcattcatccaacgctgctaaaaagctcgttcagctccatgaagtatctgaaattgggtaatgtgaa |
35741812 |
T |
|
| Q |
593 |
tttcaatgatagaggagaacttttgtatattgttagtgcactccaatgcgctcctggcttggttgaacttattatacaggtaaacatgcatgattaccta |
692 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35741811 |
tttcaatgatagaggagaacttttgtatattgttagtgcactccaatgcgctcctggcttggttgaacttattatacaggtaaacatgcatgattaccta |
35741712 |
T |
|
| Q |
693 |
agcttagatcttagcttatttcttattgttgtattttgacacttaaatttttacacttcagagttacatcgatctttctaccgtacaagtgttggatcat |
792 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35741711 |
agcttagatcttagcttatttcttattgttgtattttgacacttaaatttttacacttcagagttacatcgatctttctaccgtacaagtgttggatcat |
35741612 |
T |
|
| Q |
793 |
ccagaggag |
801 |
Q |
| |
|
|||||||| |
|
|
| T |
35741611 |
tcagaggag |
35741603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 506 - 801
Target Start/End: Complemental strand, 35748296 - 35748009
Alignment:
| Q |
506 |
atagatgcagtatgcaaatatcattcatccaacgctgctaaaaagctcgttcagctccatgaagtatctgaaattgggtaatgtgaatttcaatgataga |
605 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35748296 |
atagatgcagtatgcaaatatcattcctcaaacgctgctaaaaagctcgttcagctccatgaagtatctgaaattgggtaatgtgaatttcaatgataga |
35748197 |
T |
|
| Q |
606 |
ggagaacttttgtatattgttagtgcactccaatgcgctcctggcttggttgaacttattatacaggtaaacatgcatgattacctaagcttagatctta |
705 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
35748196 |
ggagaacttttgtatattgttagtgcactccaatgtgcttctggcttggttgaacttgttatacaggtaaa----catgattacctaagct----tctta |
35748105 |
T |
|
| Q |
706 |
gcttatttcttattgttgtattttgacacttaaatttttacacttcagagttacatcgatctttctaccgtacaagtgttggatcatccagaggag |
801 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||| ||||||||| | | ||| ||| || | ||||||||| ||||||| |||||||| |
|
|
| T |
35748104 |
gcttatttcttcttgttgtattttgacgcttaaatttttacaattcagagtttcgtggatgtttgtaacatacaagtgtcggatcattcagaggag |
35748009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 35748768 - 35748379
Alignment:
| Q |
18 |
tttgaatattttgattttgctcctcctactcttgaagtcttattgatagaatttaatccaaagatgaagtcaatttgtctcaagaaagcaaataatctga |
117 |
Q |
| |
|
||||||||||||||| || || | ||||||| ||||||||||| || ||||| ||| | |||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
35748768 |
tttgaatattttgatatttctgttactactctcaaagtcttattgctacaatttcatcaagagatgaagtcaatttgtctcaagaaagcaattaatttga |
35748669 |
T |
|
| Q |
118 |
ttgatcttacactcaaagctactgagagctgcacat----ttggtttgatcaaaagtttgccaaaaaacattcaaaggctttctattagttcacgacacg |
213 |
Q |
| |
|
||||||||||||||||||||||| | | ||| || ||||||||||||||||||| ||||||||||||||||||||||||||| || || ||| || |
|
|
| T |
35748668 |
ttgatcttacactcaaagctactaatggatgcgtatgtatttggtttgatcaaaagtttaccaaaaaacattcaaaggctttctattggtccatgactcg |
35748569 |
T |
|
| Q |
214 |
gtatttacaaggttagaaaacat-catcacta--------atattt-tgatttt-acaaggttaagattctatctcacatgttagtttggtatcaaacaa |
302 |
Q |
| |
|
|| ||||||||||||||||||| |||||||| |||||| | ||||| | || ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35748568 |
gtgtttacaaggttagaaaacaaacatcactatagattgtatatttattattttcagttgggtaagattctatctcacatgttagtttggtattaaacaa |
35748469 |
T |
|
| Q |
303 |
agcataatattctgttgacatatatggacttgttcaaatttatatttgactttttatcaccacttctatcttgcctggcctttcggtttgt |
393 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| | |||||| |
|
|
| T |
35748468 |
agcataatattctgttgacatatatggatttgttcaaatttatatttgacttattatca-cacttctatcttgcctggccttgcagtttgt |
35748379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 700 - 732
Target Start/End: Complemental strand, 35738650 - 35738618
Alignment:
| Q |
700 |
atcttagcttatttcttattgttgtattttgac |
732 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
35738650 |
atcttagcttatttcttattgttgtattttgac |
35738618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 397 - 448
Target Start/End: Complemental strand, 35748354 - 35748302
Alignment:
| Q |
397 |
aattttgattga-ggtccaatccaatatttatactgaaagttattatttttca |
448 |
Q |
| |
|
||||||||| || ||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
35748354 |
aattttgatcgatggtccaatccaatatatatgctgaaagttattatttttca |
35748302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 35737619 - 35737573
Alignment:
| Q |
82 |
tgaagtcaatttgtctcaagaaagcaaataatctgattgatcttaca |
128 |
Q |
| |
|
||||||||||||||||||| |||||| | ||||| |||||||||||| |
|
|
| T |
35737619 |
tgaagtcaatttgtctcaaaaaagcacacaatcttattgatcttaca |
35737573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 3148 - 3104
Alignment:
| Q |
81 |
atgaagtcaatttgtctcaagaaagcaaataatctgattgatctt |
125 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
3148 |
atgaagtcaatttgtctcaagaaagcaaagaatctgactgatctt |
3104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 10862894 - 10862933
Alignment:
| Q |
87 |
tcaatttgtctcaagaaagcaaataatctgattgatctta |
126 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
10862894 |
tcaatttgtctcaagaatgcaaagaatctgattgatctta |
10862933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 565 - 635
Target Start/End: Original strand, 16866279 - 16866349
Alignment:
| Q |
565 |
tgaagtatctgaaattgggtaatgtgaatttcaatgatagaggagaacttttgtatattgttagtgcactc |
635 |
Q |
| |
|
|||||||||||||||| | | |||||||| |||| |||| ||||||||||||||||||||||| |||| |
|
|
| T |
16866279 |
tgaagtatctgaaattagatcgcgtgaatttggatgaaagagaagaacttttgtatattgttagtgtactc |
16866349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University