View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5717-Insertion-4 (Length: 329)
Name: NF5717-Insertion-4
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717-Insertion-4 |
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| [»] chr3 (9 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0603 (1 HSPs) |
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| [»] scaffold0137 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 329
Target Start/End: Complemental strand, 11496072 - 11495751
Alignment:
| Q |
8 |
cttggagactctacactttgaggatatgccagaatgggaggaatggaacttgattggaggtgcaacgacaaattttcctagtctaaaaagtctgttacta |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11496072 |
cttggagactctacactttgaggatatgccagaatgggaggaatggaacttcattggaggtacaacgacaaattttcctagtctaaaaagtctgttacta |
11495973 |
T |
|
| Q |
108 |
agtaagtgcccgaaactgagaggagacatacctgaccaacttccttccttaactgaacttgagttaagaggatatcctttttcggtggaatcaagacatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11495972 |
agtaagtgcccgaaactgagaggagacatacctgacaatcttccttccttaactgaacttgagttaagaggatatcctttttcggtggaatcaagacatt |
11495873 |
T |
|
| Q |
208 |
tagatgataatagcaatttcattacgataattccattctcacatgttatcagccaattgatgctccctctctattctcttcgaaagtttaccatagatga |
307 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11495872 |
tagatgataatagcaatttcataatgataattccattctcacatgttatcagccaattgatgctccctctctattctcttcgacagtttaccatagatga |
11495773 |
T |
|
| Q |
308 |
ctttccatttctaacatctttc |
329 |
Q |
| |
|
||||||||||||||| |||||| |
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|
| T |
11495772 |
ctttccatttctaacgtctttc |
11495751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 5967473 - 5967642
Alignment:
| Q |
8 |
cttggagactctacactttgaggatatgccagaatgggaggaatggaacttgattggaggtgcaacgacaaattttcctagtctaaaaagtctgttacta |
107 |
Q |
| |
|
||||||||||||||| |||||| |||||| ||| ||||| || |||||||||||||||||| | | || |||||||||||||||| | ||| |||| |
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| T |
5967473 |
cttggagactctacattttgagaatatgcaagagtgggaagagtggaacttgattggaggt---atggataagtttcctagtctaaaaactttgtcacta |
5967569 |
T |
|
| Q |
108 |
agtaagtgcccgaaactgag---aggagacatacctgaccaacttccttccttaactgaacttgagttaagag |
177 |
Q |
| |
|
|||||||| || |||||||| |||| ||||||||||| || ||||||| |||||||||| |||||| |||| |
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|
| T |
5967570 |
agtaagtgtccaaaactgagattaggaaacatacctgacaaatttccttctttaactgaacctgagttgagag |
5967642 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 910074 - 910007
Alignment:
| Q |
28 |
aggatatgccagaatgggaggaatggaacttgattggaggtgcaacgacaaattttcctagtctaaaa |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| | | | ||||||||||||||| |
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|
| T |
910074 |
aggatatgccagaatgggaggaatggaacttgattggaggtacaactatacagtttcctagtctaaaa |
910007 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 2921197 - 2921354
Alignment:
| Q |
23 |
ctttgaggatatgccagaatgggaggaatggaacttgattggaggtgcaacgacaaattttcctagtctaaaaagtctgttactaagtaagtgcccgaaa |
122 |
Q |
| |
|
|||||||||| ||| ||| ||||||||| | ||||||||||||||| | | ||||| |||| ||||||||||| | ||| |||||||| |||||||||| |
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|
| T |
2921197 |
ctttgaggatgtgcaagagtgggaggaacgaaacttgattggaggtacgaatacaaagtttcttagtctaaaaactttgtcactaagtaggtgcccgaaa |
2921296 |
T |
|
| Q |
123 |
ctgag---aggagacatacctgaccaacttccttccttaactgaacttgagttaagag |
177 |
Q |
| |
|
||||| |||| ||||| |||| || ||||||||||| || || | |||||||||| |
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|
| T |
2921297 |
ctgagtgtaggaaacataattgacaaatttccttccttatctaaaatggagttaagag |
2921354 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 238 - 329
Target Start/End: Complemental strand, 7489418 - 7489327
Alignment:
| Q |
238 |
ttccattctcacatgttatcagccaattgatgctccctctctattctcttcgaaagtttaccatagatgactttccatttctaacatctttc |
329 |
Q |
| |
|
||||||| ||| |||| ||| |||||||||| |||||||| ||||||||||| |||| |||||||| | |||||||| |||||| |||||| |
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|
| T |
7489418 |
ttccattgtcagatgtattcaaccaattgatgttccctctcaattctcttcgacagttgaccatagacggctttccatctctaacgtctttc |
7489327 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 3911872 - 3911831
Alignment:
| Q |
27 |
gaggatatgccagaatgggaggaatggaacttgattggaggt |
68 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
3911872 |
gaggatatgccagaatggaaggaatggaacatgattggaggt |
3911831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 4090468 - 4090399
Alignment:
| Q |
24 |
tttgaggatatgccagaatgggaggaatggaacttgattggaggtgcaacgacaaattttcctagtctaa |
93 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| ||||||||||| || |||| | ||||||||||||| |
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|
| T |
4090468 |
tttgaggatatgcaagagtgggaggaatggaaactgattggaggtacattgacagagtttcctagtctaa |
4090399 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 3887117 - 3887172
Alignment:
| Q |
30 |
gatatgccagaatgggaggaatggaacttgattggaggtgcaacgacaaattttcc |
85 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| | |||| ||| ||||||| |
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|
| T |
3887117 |
gatatgccagagtgggaggactggaacttgattggagatacaacaacagattttcc |
3887172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 7489587 - 7489528
Alignment:
| Q |
8 |
cttggagactctacactttgaggatatgccagaatgggaggaatggaacttgattggagg |
67 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||| |||| | |||| ||||| |
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|
| T |
7489587 |
cttggagactctacgcttcaaggatatgccagaatgggaggagtggagcatgataggagg |
7489528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 17313396 - 17313717
Alignment:
| Q |
8 |
cttggagactctacactttgaggatatgccagaatgggaggaatggaacttgattggaggtgcaacgacaaattttcctagtctaaaaagtctgttacta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||| |
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|
| T |
17313396 |
cttggagactctacactttgaggatatgccagaatgggaggagtggaacatgattggaggtacaactacaaattttcctagtctaaaaagtttgttacta |
17313495 |
T |
|
| Q |
108 |
agtaagtgcccgaaactgagaggagacatacctgaccaacttccttccttaactgaacttgagttaagaggatatcctttttcggtggaatcaagacatt |
207 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
17313496 |
agcaagtgcccgaaactgagaggagacatacctgacaaacttccttccttaactgaacttgagttaagaggatatcctttgctggtggagtcaagacatt |
17313595 |
T |
|
| Q |
208 |
tagatgataatagcaatttcattacgataattccattctcacatgttatcagccaattgatgctccctctctattctcttcgaaagtttaccatagatga |
307 |
Q |
| |
|
||||||||||||||||||||| || |||||||| ||||| ||||| ||||||||| |||||||||||||||||||||||| | |||| |||||| | || |
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|
| T |
17313596 |
cagatgataatagcaatttcataactataattccgttctctcatgtaatcagccaactgatgctccctctctattctcttctacagttgaccatatacga |
17313695 |
T |
|
| Q |
308 |
ctttccatttctaacatctttc |
329 |
Q |
| |
|
|||||||||||| || |||||| |
|
|
| T |
17313696 |
ctttccatttctgacgtctttc |
17313717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 13935309 - 13935392
Alignment:
| Q |
8 |
cttggagactctacactttgaggatatgccagaatgggaggaatggaacttgattggaggtgcaacgacaaattttcctagtct |
91 |
Q |
| |
|
||||||||||||||| ||| |||||||| ||| |||||||||||||| | ||||||||| || | ||| | ||||||||||| |
|
|
| T |
13935309 |
cttggagactctacagtttagggatatgcaagagtgggaggaatggaagctaattggaggtacatctacagagtttcctagtct |
13935392 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 18389679 - 18389977
Alignment:
| Q |
9 |
ttggagactctacactttgaggatatgccagaatgggaggaatggaacttgattggaggtgcaacgacaaattttcctagtctaaaaagtctgttactaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||| | || ||| |||| | || || | |||||||||||||||||| ||||||||| |
|
|
| T |
18389679 |
ttggagactctacactttgaggatatgccagagtgggaggagtggagcatggttgaaggtaccactacgcagtttcctagtctaaaaagtttgttactaa |
18389778 |
T |
|
| Q |
109 |
gtaagtgcccgaaactgagaggagacatacctgaccaacttccttc---cttaactgaacttgagttaagaggatatcctttttcggtggaatcaagaca |
205 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| |||||||||| ||||||| |||||||||||| ||| | |||| | ||| | ||| || | |
|
|
| T |
18389779 |
gtaagtgcccgaaactgagaggaaatatacctgacaaacttccttcctgcttaactaaacttgagttaatagggtgtcctctactggtcaattcacgata |
18389878 |
T |
|
| Q |
206 |
tttagatgataatagcaatttcattacgataattccattctcacatgttatcagccaattgatgctccctctctattctcttcgaaagtttaccataga |
304 |
Q |
| |
|
|| |||| |||||| ||||| ||| | || ||||||| | |||| |||||||||||||||| |||||| ||||||||||| | ||||||||||| |
|
|
| T |
18389879 |
ttcagatcataatatcaattgcataatcatgtttccattgttggatgtattcagccaattgatgcttcctctcaattctcttcgacaatttaccataga |
18389977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 5990180 - 5990352
Alignment:
| Q |
8 |
cttggagactctacactttgaggatatgccagaatgggaggaatggaacttgattggaggtgcaacgacaaattttcctagtctaaaaagtctgttacta |
107 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| |||| | || ||| | |||||| | |||||| | ||| |||| |
|
|
| T |
5990180 |
cttggagactctgcactttgaggatatgcaagagtgggaggaatggaacttgattgaaggtacgaccacagagtttccttctttaaaaactttgtcacta |
5990279 |
T |
|
| Q |
108 |
agtaagtgcccgaaactgagaggag---acatacctgaccaacttccttccttaactgaacttgagttaagag |
177 |
Q |
| |
|
|||||||||||||||||||||| || |||| ||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
5990280 |
agtaagtgcccgaaactgagagtaggaaacattgctgacaagtttccttccttaactgaacttgagttaagag |
5990352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 16448436 - 16448608
Alignment:
| Q |
8 |
cttggagactctacactttgaggatatgccagaatgggaggaatggaacttgattggaggtgcaacgacaaattttcctagtctaaaaagtctgttacta |
107 |
Q |
| |
|
||||| |||||||||||||||||||||| ||| |||||||||||| |||||| ||||||| |||| ||||| ||||||||| |||||| | | ||| | |
|
|
| T |
16448436 |
cttggtgactctacactttgaggatatggaagagtgggaggaatgggacttgaatggaggtacaacaacaaagtttcctagtttaaaaactttattattg |
16448535 |
T |
|
| Q |
108 |
agtaagtgcccgaaactgag---aggagacatacctgaccaacttccttccttaactgaacttgagttaagag |
177 |
Q |
| |
|
||||||||||| ||||| || |||| |||| ||| || || ||||||||||||||||||||||||| |||| |
|
|
| T |
16448536 |
agtaagtgcccaaaacttagcgtaggaaacatgcctaacaaatttccttccttaactgaacttgagttgagag |
16448608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0603 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0603
Description:
Target: scaffold0603; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 3282 - 3222
Alignment:
| Q |
8 |
cttggagactctacactttgaggatatgccagaatgggaggaatggaacttgattggaggt |
68 |
Q |
| |
|
||||||||||||||| |||||| |||||| ||| |||||||| |||||||||||||||||| |
|
|
| T |
3282 |
cttggagactctacattttgagaatatgcaagagtgggaggagtggaacttgattggaggt |
3222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 18704 - 18663
Alignment:
| Q |
27 |
gaggatatgccagaatgggaggaatggaacttgattggaggt |
68 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
18704 |
gaggatatgccagaatggaaggaatggaacatgattggaggt |
18663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 1459 - 1515
Alignment:
| Q |
29 |
ggatatgccagaatgggaggaatggaacttgattggaggtgcaacgacaaattttcc |
85 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||| | |||| ||| ||||||| |
|
|
| T |
1459 |
ggatatgccagagtgggaggactggaacttgattggagatacaacaacagattttcc |
1515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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