View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717-Insertion-5 (Length: 295)
Name: NF5717-Insertion-5
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717-Insertion-5 |
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| [»] chr4 (10 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 5173144 - 5173431
Alignment:
| Q |
8 |
ctagcaacaatattgttggcccactcccaagttggttgataaataatgatgccatacaatatttggatctatcaaacaacaattttagtggtttgcttcc |
107 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173144 |
ctagcaacaatattgttggctcactcccaagttggttgataaataatgatgccatacaatatttggatctatcaaacaacaattttagtggtttgcttcc |
5173243 |
T |
|
| Q |
108 |
agaagatatattccttcctagtattacctatttgaacttttcaaggaatagctttgaaggaaatataccttcttcaattggtaagatgaaaaatcttcag |
207 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
5173244 |
agaagatatattccttccaagtattacctatttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaaaatcttgag |
5173343 |
T |
|
| Q |
208 |
tactttgacctctctcataataatttctcaggtgtgttacctaaacaactggccacagattgcgataatttacaatacttgtttctct |
295 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
5173344 |
tactttgacctctctcataataatttctcaggtgagttacctaaacaactggccacatattgcgataatttacaatacttgattctct |
5173431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 8 - 295
Target Start/End: Complemental strand, 4842381 - 4842091
Alignment:
| Q |
8 |
ctagcaacaatattgttggcccactcccaagttggttgataaataatgatgccatacaatatttggatctatcaaacaacaattttagtggtttgcttcc |
107 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4842381 |
ctagcaacaatattg---gctcactcccaagttggttgataaataatgttggcatacaatatttggatctatcaaacaacaattttagtggtttgcttcc |
4842285 |
T |
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| Q |
108 |
agaagatat------attccttcctagtattacctatttgaacttttcaaggaatagctttgaaggaaatataccttcttcaattggtaagatgaaaaat |
201 |
Q |
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||||||||| ||||||||||||| |||||||| |||| |||||| |||| ||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
4842284 |
agaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataactttgaaggaaatataccttcatcaatttgtaagatgaaaaaa |
4842185 |
T |
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| Q |
202 |
cttcagtactttgacctctctcataataatttctcaggtgtgttacctaaacaactggccacagattgcgataatttacaatacttgtttctct |
295 |
Q |
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||| ||||||| ||||||||||| ||| |||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||| |||||| |
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| T |
4842184 |
cttaagtacttggacctctctcagaatcatttctcaggtgagttacctaaacaactggccgcagattgcaataatttacaatacttgattctct |
4842091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 32 - 288
Target Start/End: Original strand, 5182497 - 5182759
Alignment:
| Q |
32 |
tcccaagttggttgataaataatgatgccatacaatatttggatctatcaaacaacaattttagtggtttgcttccagaagatat------attccttcc |
125 |
Q |
| |
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||||||||||||||||| ||||| || ||| | ||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||||||| |
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| T |
5182497 |
tcccaagttggttgatagataatcataacatgaattatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatattggtatattccttcc |
5182596 |
T |
|
| Q |
126 |
tagtattacctatttgaacttttcaaggaatagctttgaaggaaatataccttcttcaattggtaagatgaaaaatcttcagtactttgacctctctcat |
225 |
Q |
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|||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| | ||| ||||||| ||||||||||| |
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| T |
5182597 |
tagtgttaagtatttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaacaacttgagtacttggacctctctcag |
5182696 |
T |
|
| Q |
226 |
aataatttctcaggtgtgttacctaaacaactggccacagattgcgataatttacaatacttg |
288 |
Q |
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||| |||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
5182697 |
aatcatttctcaggtgagttacctaaacaactggccacaggttgtgataatttacaatacttg |
5182759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 5195872 - 5196159
Alignment:
| Q |
10 |
agcaacaatattgttggcccactcccaagt---tggttgataaataatgatgccatacaatatttggatctatcaaacaacaattttagtggtttgcttc |
106 |
Q |
| |
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||||||||||| |||| ||||||||||| ||||||||| ||||||||| ||| |||||||||| |||||||||||||||| ||||||||||||| |
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| T |
5195872 |
agcaacaatataaatggctcactcccaagtaattggttgatacataatgatgacatgatatatttggatatatcaaacaacaatttgagtggtttgcttc |
5195971 |
T |
|
| Q |
107 |
cagaagatat------attccttcctagtattacctatttgaacttttcaaggaatagctttgaaggaaatataccttcttcaattggtaagatgaaaaa |
200 |
Q |
| |
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|| ||||||| ||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
5195972 |
caaaagatatcggtatattccttcctaatgttacctatttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagatgaaaca |
5196071 |
T |
|
| Q |
201 |
tcttcagtactttgacctctctcataataatttctcaggtgtgttacctaaacaactggccacagattgcgataatttacaatacttg |
288 |
Q |
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| T |
5196072 |
acttcaactcttggacttctctcaaaatcatttctcaggtgagttacctaaacaactggccacaggttgtgataatttacaatacttg |
5196159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 65 - 288
Target Start/End: Original strand, 5214087 - 5214316
Alignment:
| Q |
65 |
aatatttggatctatcaaacaacaattttagtggtttgcttccagaagatat------attccttcctagtattacctatttgaacttttcaaggaatag |
158 |
Q |
| |
|
||||||||||| |||||| ||||| ||| |||||||| |||||| ||||||| ||||||||||||| |||||||| |||| |||||| |||| |
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| T |
5214087 |
aatatttggatatatcaatcaacagtttaagtggttttcttccaaaagatattggtatattccttcctagtgttacctatatgaatttttcatcaaataa |
5214186 |
T |
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| Q |
159 |
ctttgaaggaaatataccttcttcaattggtaagatgaaaaatcttcagtactttgacctctctcataataatttctcaggtgtgttacctaaacaactg |
258 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||| ||| ||| ||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
5214187 |
ctttgaaggaaatataccttcatcaattggtaagatgaaaaaacttgagtccttggacctctctcataatcatttctcaggtgagttacctaaacaactg |
5214286 |
T |
|
| Q |
259 |
gccacagattgcgataatttacaatacttg |
288 |
Q |
| |
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||||||| ||| |||||||||||||||||| |
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| T |
5214287 |
gccacaggttgtgataatttacaatacttg |
5214316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 33 - 289
Target Start/End: Original strand, 5160253 - 5160515
Alignment:
| Q |
33 |
cccaagttggttgataaataatgatgccatacaatatttggatctatcaaacaacaattttagtggtttgcttccagaagatat------attccttcct |
126 |
Q |
| |
|
|||||||||||||||| ||||| || ||| | ||||||||| |||||||||||||||| ||||| ||||| || ||||| | ||||||||| |
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|
| T |
5160253 |
cccaagttggttgatacataatcataacattaattatttggatatatcaaacaacaatttaagtgggttgctaacaaaagattttgatttattccttcca |
5160352 |
T |
|
| Q |
127 |
agtattacctatttgaacttttcaaggaatagctttgaaggaaatataccttcttcaattggtaagatgaaaaatcttcagtactttgacctctctcata |
226 |
Q |
| |
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||| ||| | |||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| ||| | ||| ||||||||||||| |
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| T |
5160353 |
agtgctacacagttgaacttttcatggaatagctttgaaggaaatataccttcatcaattggtaagataaaaaaacttttgctcttggacctctctcata |
5160452 |
T |
|
| Q |
227 |
ataatttctcaggtgtgttacctaaacaactggccacagattgcgataatttacaatacttgt |
289 |
Q |
| |
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|| ||||||| |||| |||||| ||||||||||||||||||| |||| ||||| |||||||| |
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| T |
5160453 |
atcatttctcgggtgagttaccaaaacaactggccacagattctgatagtttactatacttgt |
5160515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 7142412 - 7142606
Alignment:
| Q |
13 |
aacaatattgttggcccactcccaag---ttggttgataaataatgatgccatacaatatttggatctatcaaacaacaattttagtggtttgcttccag |
109 |
Q |
| |
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|||||||| |||||| |||||||||| |||||||||| ||||||||| |||||| |||||||| |||||||||||||||| |||||||||||||||| |
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| T |
7142412 |
aacaatatagttggctcactcccaagaaattggttgatacataatgatgggatacaacatttggatatatcaaacaacaatttaagtggtttgcttccag |
7142511 |
T |
|
| Q |
110 |
aaga------tatattccttcctagtattacctatttgaacttttcaaggaatagctttgaaggaaatataccttcttcaattggtaagatgaaa |
198 |
Q |
| |
|
|||| |||||||||||||||| || |||| ||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||| |
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| T |
7142512 |
aagatattggtatattccttcctagtgttgactatctgaacttttcattgaatagctttcaaggaaatataccttaatcaattggtatgatgaaa |
7142606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 174
Target Start/End: Complemental strand, 4856834 - 4856686
Alignment:
| Q |
32 |
tcccaagttggttgataaataatgatgccatacaatatttggatctatcaaacaacaattttagtggtttgcttccagaagatat------attccttcc |
125 |
Q |
| |
|
||||||||| ||||||| ||||| || ||| | ||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||||||| |
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| T |
4856834 |
tcccaagttcgttgatagataatcataacatgaattatttggatatatcaaacaacaatttgagtggtttgcttccaaaagatattggtatattccttcc |
4856735 |
T |
|
| Q |
126 |
tagtattacctatttgaacttttcaaggaatagctttgaaggaaatata |
174 |
Q |
| |
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|||| |||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
4856734 |
tagtgttacctatttgaacatttcatggaatagctttgaaggaaatata |
4856686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 4856686 - 4856620
Alignment:
| Q |
200 |
atcttcagtactttgacctctctcataataatttctcaggtgtgttacctaaacaactggccacaga |
266 |
Q |
| |
|
||||| ||||||| ||||||||||| ||| |||||||||||| ||||||| ||||| |||||||||| |
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|
| T |
4856686 |
atcttaagtacttggacctctctcagaatcatttctcaggtgagttacctgaacaattggccacaga |
4856620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 5203283 - 5203345
Alignment:
| Q |
13 |
aacaatattgttggcccactcccaagttggttgataaataatgatgccatacaatatttggat |
75 |
Q |
| |
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||||| || |||||| || ||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
5203283 |
aacaaaatagttggctcattcccaagttggttgatacataatgatgatatacaatatttggat |
5203345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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