View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5717-Insertion-7 (Length: 230)

Name: NF5717-Insertion-7
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5717-Insertion-7
NF5717-Insertion-7
[»] chr5 (19 HSPs)
chr5 (8-230)||(10746398-10746620)
chr5 (18-221)||(10716365-10716565)
chr5 (24-222)||(10612330-10612537)
chr5 (8-164)||(10581682-10581838)
chr5 (8-163)||(10565691-10565846)
chr5 (10-166)||(10605437-10605593)
chr5 (8-119)||(10739792-10739903)
chr5 (34-166)||(9827352-9827484)
chr5 (34-166)||(9835721-9835853)
chr5 (24-119)||(10762223-10762318)
chr5 (44-118)||(7193739-7193813)
chr5 (59-166)||(10587895-10588002)
chr5 (9-124)||(10659453-10659568)
chr5 (58-138)||(10651619-10651699)
chr5 (19-76)||(9849623-9849680)
chr5 (99-163)||(10760796-10760860)
chr5 (8-119)||(10559630-10559741)
chr5 (18-109)||(19605243-19605334)
chr5 (56-122)||(10551530-10551596)
[»] chr6 (5 HSPs)
chr6 (34-165)||(12958743-12958874)
chr6 (34-166)||(12900237-12900369)
chr6 (34-164)||(12949284-12949415)
chr6 (34-166)||(12932943-12933075)
chr6 (34-166)||(12907854-12907986)
[»] chr2 (1 HSPs)
chr2 (34-165)||(17922810-17922941)
[»] chr3 (1 HSPs)
chr3 (25-122)||(31466541-31466638)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 10746398 - 10746620
Alignment:
Q  8 caagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10746398 caagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaa 10746497  T
Q  108 aagtgaaactaaacactcttttacagttggaataagattctcattgtttccatcttctactgcatctcttgatagaagatgcgggtccaagatatttata 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10746498 aagtgaaactaaacactcttttacagttggaataagattctcattgtttccatcttctactgcatctcttgatagaagatgcgggtccaagatatttata 10746597  T
Q  208 agattatcaggaaacgatattgc 230  Q
    |||||||||||||||||||||||    
T  10746598 agattatcaggaaacgatattgc 10746620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 10716365 - 10716565
Alignment:
Q  18 ctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaact 117  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||| |||||||||| |||||||||||| ||||| ||||||    
T  10716365 ctttctgattatgttgagctctctagtgacatccataatattcattctttctatcggtgattccattgtacaaacaagtccaatcctgaaaagagaaact 10716464  T
Q  118 aaacactcttttacagttggaataagattctcattgtttccatcttctactgcatctcttgatagaagatgcgggtccaagatatttataagattatcag 217  Q
    || || || ||||| |  ||||||||||||||  || |||||||||   ||||||||||||||| |||||| || ||||| || ||||||||||| ||||    
T  10716465 aagcattcatttaccgcaggaataagattctctatgcttccatctt---ctgcatctcttgatacaagatgtggatccaaaatctttataagattgtcag 10716561  T
Q  218 gaaa 221  Q
    ||||    
T  10716562 gaaa 10716565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 10612537 - 10612330
Alignment:
Q  24 gattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaacac 123  Q
    |||| |||| || |||||||| ||||||||| |||||||||||||||| |||||||| |||| ||||| ||||||||||||||||||||||||||| |||    
T  10612537 gattgtgttaagttctctagtaacatccacaatattcattctttctttgggtgattccattgaacaaagaagtccaatcctaaaaagtgaaactaagcac 10612438  T
Q  124 tcttttacagttggaataagattctcattgtttccatctt---------ctactgcatctcttgatagaagatgcgggtccaagatatttataagattat 214  Q
    || |||| | ||||||||||||||||| | ||||||||||         || |||||| | |||| | |||||| ||||||||||| ||||||||||||     
T  10612437 tcctttaaacttggaataagattctcactctttccatcttgtatttctacttctgcatattttgacacaagatgtgggtccaagatctttataagattag 10612338  T
Q  215 caggaaac 222  Q
    ||||||||    
T  10612337 caggaaac 10612330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 10581838 - 10581682
Alignment:
Q  8 caagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaa 107  Q
    ||||||||||||||||||||||  | |||||| ||   |||||| || |||||| ||||||||||||||| || |||| ||| |||||||||||||||||    
T  10581838 caagaaaggcctttctgattatactaagctctatacatacatcctcaatattcagtctttcttttggtgactccattgaacacataagtccaatcctaaa 10581739  T
Q  108 aagtgaaactaaacactcttttacagttggaataagattctcattgtttccatcttc 164  Q
    |||||||||||| ||||| ||| ||| ||||||||||||||||   |||||||||||    
T  10581738 aagtgaaactaagcactcctttgcagctggaataagattctcaagatttccatcttc 10581682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 10565846 - 10565691
Alignment:
Q  8 caagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaa 107  Q
    ||||||||||||||||||||||  | |||||||||   ||| || || | || ||||||||||||||||| || |||| ||| |||||||||||||||||    
T  10565846 caagaaaggcctttctgattatactaagctctctacatacaacctcaatgttgattctttcttttggtgactccattgaacacataagtccaatcctaaa 10565747  T
Q  108 aagtgaaactaaacactcttttacagttggaataagattctcattgtttccatctt 163  Q
    |||||||||||| ||||| ||| ||| |||||||||||||||||  ||||||||||    
T  10565746 aagtgaaactaagcactcctttgcaggtggaataagattctcatgatttccatctt 10565691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 166
Target Start/End: Complemental strand, 10605593 - 10605437
Alignment:
Q  10 agaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaa 109  Q
    ||||||||||| | |||| |||| |||||| |||| ||||||| | |||||||||||||||| |||||||| |||| ||||||||||||||| |||||||    
T  10605593 agaaaggccttccggattgtgttaagctctttagtaacatccataatattcattctttctttcggtgattccattgaacaaataagtccaattctaaaaa 10605494  T
Q  110 gtgaaactaaacactcttttacagttggaataagattctcattgtttccatcttcta 166  Q
    ||||||||||  | || | |||  ||||||||||||||  || |||||||| |||||    
T  10605493 gtgaaactaaggattcctctacccttggaataagattcgtatggtttccattttcta 10605437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 10739792 - 10739903
Alignment:
Q  8 caagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaa 107  Q
    ||||||||||||||| |||| |||| ||||||  | | ||||||| | |||||||||||||||| |||||||| |||| ||||||||||||||| |||||    
T  10739792 caagaaaggcctttcggattgtgttaagctcttgattaacatccataatattcattctttctttcggtgattccattgaacaaataagtccaattctaaa 10739891  T
Q  108 aagtgaaactaa 119  Q
    ||||||||||||    
T  10739892 aagtgaaactaa 10739903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 34 - 166
Target Start/End: Original strand, 9827352 - 9827484
Alignment:
Q  34 agctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaacactcttttacag 133  Q
    ||||||||||| ||||| ||  | |||||||||||||||||||||||  ||| |||   |||||||||||| |||| ||||||||| || |  |||||||    
T  9827352 agctctctagtaacatctactatgttcattctttcttttggtgattctcttgaacaggcaagtccaatccttaaaactgaaactaagcaattctttacag 9827451  T
Q  134 ttggaataagattctcattgtttccatcttcta 166  Q
     |||||||||||||||| | |||||||||||||    
T  9827452 ctggaataagattctcactatttccatcttcta 9827484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 34 - 166
Target Start/End: Original strand, 9835721 - 9835853
Alignment:
Q  34 agctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaacactcttttacag 133  Q
    ||||||||||| ||||| ||  | |||||||||||||||||||||||  ||| |||   |||||||||||| |||| ||||||||| || |  |||||||    
T  9835721 agctctctagtaacatctactatgttcattctttcttttggtgattctcttgaacaggcaagtccaatccttaaaactgaaactaagcaattctttacag 9835820  T
Q  134 ttggaataagattctcattgtttccatcttcta 166  Q
     |||||||||||||||| | |||||||||||||    
T  9835821 ctggaataagattctcactatttccatcttcta 9835853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 10762223 - 10762318
Alignment:
Q  24 gattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaa 119  Q
    |||| |||| ||||||  ||| ||||||| | |||||||||||||||| |||||||| |||| ||||||||||||||| |||||||||||||||||    
T  10762223 gattgtgttaagctcttgagtaacatccataatattcattctttctttcggtgattccattgaacaaataagtccaattctaaaaagtgaaactaa 10762318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 7193813 - 7193739
Alignment:
Q  44 tgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaacta 118  Q
    ||||||||||  ||||||||||||||||||||||||| | || ||||  ||||||||||||||||||||||||||    
T  7193813 tgacatccactatattcattctttcttttggtgattccactgaacaagcaagtccaatcctaaaaagtgaaacta 7193739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 10587895 - 10588002
Alignment:
Q  59 tcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaacactcttttacagttggaataagattctcattgtttcc 158  Q
    |||||||||||||||||||||| |||| ||||  |||||||||||| | |||||||||||| ||||  |    || |||||||||||||||||| | |||    
T  10587895 tcattctttcttttggtgattccattgaacaagcaagtccaatccttagaagtgaaactaagcacttctccttagctggaataagattctcattatgtcc 10587994  T
Q  159 atcttcta 166  Q
    ||||||||    
T  10587995 atcttcta 10588002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 10659453 - 10659568
Alignment:
Q  9 aagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaa 108  Q
    |||||| |||||| |||||||| | | |||||| |||||||| ||  ||||||||||||||||||||||||  | || |||   ||||||||||| ||||    
T  10659453 aagaaatgcctttttgattatgcttaactctctggtgacatcaactatattcattctttcttttggtgatttcactgaacatgcaagtccaatccgaaaa 10659552  T
Q  109 agtgaaactaaacact 124  Q
    ||||||||||| ||||    
T  10659553 agtgaaactaagcact 10659568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 10651619 - 10651699
Alignment:
Q  58 ttcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaacactcttttacagttgga 138  Q
    ||||||||||||||||||||||  | || ||||  |||||||||||| |||||||||||||||||||  | ||||||||||    
T  10651619 ttcattctttcttttggtgatttcactgaacaagcaagtccaatcctgaaaagtgaaactaaacacttctctacagttgga 10651699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 9849623 - 9849680
Alignment:
Q  19 tttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtg 76  Q
    |||||||||||||| |||||||||||||||||||  |||||||||||| |||| ||||    
T  9849623 tttctgattatgtttagctctctagtgacatccattgtattcattcttgctttcggtg 9849680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 10760796 - 10760860
Alignment:
Q  99 aatcctaaaaagtgaaactaaacactcttttacagttggaataagattctcattgtttccatctt 163  Q
    ||||||||| ||||||||||| ||||  | |||| |||||||||||||| |||||||||||||||    
T  10760796 aatcctaaacagtgaaactaagcacttctctacacttggaataagattcccattgtttccatctt 10760860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 10559741 - 10559630
Alignment:
Q  8 caagaaaggcctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaa 107  Q
    |||||||  |||||||||| ||||| || ||||||||||||||||   |||||||||||| | |||| ||||| |  | |||   |||||||||||||||    
T  10559741 caagaaaaacctttctgatcatgtttagttctctagtgacatccaatatattcattctttgtgttggcgattccaccgaacatgcaagtccaatcctaaa 10559642  T
Q  108 aagtgaaactaa 119  Q
     |||||||||||    
T  10559641 gagtgaaactaa 10559630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 19605243 - 19605334
Alignment:
Q  18 ctttctgattatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaa 109  Q
    ||||||||||||||| |||||||||||| ||||  |  |||||||||||||||| || ||||| || | |||   |||||||||||||||||    
T  19605243 ctttctgattatgtttagctctctagtggcatcttctatattcattctttctttgggagattccatcgaacaggcaagtccaatcctaaaaa 19605334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 10551596 - 10551530
Alignment:
Q  56 tattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaaca 122  Q
    ||||||||||||||||||||||||| | || ||||  |||| ||||||||| |||||||| ||||||    
T  10551596 tattcattctttcttttggtgattccactgaacaagaaagtgcaatcctaagaagtgaaagtaaaca 10551530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 165
Target Start/End: Complemental strand, 12958874 - 12958743
Alignment:
Q  34 agctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaacactcttttacag 133  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||| | || ||| | ||||||||||||||||||||||||||| ||||| | |||||    
T  12958874 agctctctagtgacatcgacaatattcattctttcttttggtgattccaatgaacataaaagtccaatcctaaaaagtgaaactaagcactcctctacag 12958775  T
Q  134 ttggaataagattctcattgtttccatcttct 165  Q
    ||||||||||| ||||||  ||||||||||||    
T  12958774 ttggaataagaatctcatgatttccatcttct 12958743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 166
Target Start/End: Complemental strand, 12900369 - 12900237
Alignment:
Q  34 agctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaacactcttttacag 133  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |  | ||| | |||| ||||||||| |||||||||||| ||||||| || ||    
T  12900369 agctctctagtgacatccacaatattcattctttcttttggtgattccaaagaacataaaagtgcaatcctaagaagtgaaactaagcactcttctatag 12900270  T
Q  134 ttggaataagattctcattgtttccatcttcta 166  Q
    |||||||| || ||||||  |||||||||||||    
T  12900269 ttggaatatgaatctcatgatttccatcttcta 12900237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 164
Target Start/End: Complemental strand, 12949415 - 12949284
Alignment:
Q  34 agctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaa-gtgaaactaaacactcttttaca 132  Q
    ||||||||||||||||||||| ||||||||||||| |||| |||||| | || ||||| ||||||||||||||||| | |||||| | ||||||| || |    
T  12949415 agctctctagtgacatccacaatattcattctttcatttgatgattccaatgaacaaaaaagtccaatcctaaaaaggggaaactgagcactcttctata 12949316  T
Q  133 gttggaataagattctcattgtttccatcttc 164  Q
    |||||||||||| ||||||  |||||||||||    
T  12949315 gttggaataagaatctcatgatttccatcttc 12949284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 34 - 166
Target Start/End: Complemental strand, 12933075 - 12932943
Alignment:
Q  34 agctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaacactcttttacag 133  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |  | ||| | |||| ||||||||| ||||||||| || || |||| || ||    
T  12933075 agctctctagtgacatccacaatattcattctttcttttggtgattccaaagaacataaaagtgcaatcctaagaagtgaaacaaagcaatcttctatag 12932976  T
Q  134 ttggaataagattctcattgtttccatcttcta 166  Q
    |||||||| || ||||||  |||||||||||||    
T  12932975 ttggaatatgaatctcatgatttccatcttcta 12932943  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 34 - 166
Target Start/End: Complemental strand, 12907986 - 12907854
Alignment:
Q  34 agctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaacactcttttacag 133  Q
    ||||||||| ||||||| ||| |||||||||||||||||| |||||| | || ||| | ||||||||||||||||||||||  ||| ||||| | ||||     
T  12907986 agctctctattgacatctacaatattcattctttcttttgttgattccaatgaacataaaagtccaatcctaaaaagtgaagttaagcactcctctacat 12907887  T
Q  134 ttggaataagattctcattgtttccatcttcta 166  Q
    ||||||||||| ||||||   ||||||||||||    
T  12907886 ttggaataagaatctcatgaattccatcttcta 12907854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 17922810 - 17922941
Alignment:
Q  34 agctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaacactcttttacag 133  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| | || ||||| |||||||||||||||||| |||||||| ||||| | |||||    
T  17922810 agctctctagtgacatccacaatattcattctttcttttggtgattccaatgaacaaaaaagtccaatcctaaaaagggaaactaagcactcctctacag 17922909  T
Q  134 ttggaataagattctcattgtttccatcttct 165  Q
    |||||| |||| ||||||  ||||||||||||    
T  17922910 ttggaagaagaatctcatgatttccatcttct 17922941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 31466541 - 31466638
Alignment:
Q  25 attatgttgagctctctagtgacatccacagtattcattctttcttttggtgattcaattgtacaaataagtccaatcctaaaaagtgaaactaaaca 122  Q
    ||||| || ||||||||| |||| || ||  || |||| ||||||||||||||||| |||| ||||  |||| |||| ||||||||||||| ||||||    
T  31466541 attatattaagctctctaatgacttcaaccatactcatcctttcttttggtgattccattgaacaaccaagtgcaatactaaaaagtgaaattaaaca 31466638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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