View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5717_high_10 (Length: 601)

Name: NF5717_high_10
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5717_high_10
NF5717_high_10
[»] chr1 (2 HSPs)
chr1 (124-591)||(22589509-22589980)
chr1 (16-109)||(22589296-22589389)
[»] chr2 (2 HSPs)
chr2 (124-591)||(30935093-30935556)
chr2 (16-109)||(30936267-30936360)
[»] chr5 (2 HSPs)
chr5 (141-406)||(34548115-34548354)
chr5 (63-109)||(4377019-4377065)
[»] chr8 (3 HSPs)
chr8 (16-106)||(15437487-15437577)
chr8 (16-106)||(15528791-15528881)
chr8 (63-109)||(8834571-8834617)
[»] scaffold0209 (2 HSPs)
scaffold0209 (63-109)||(7165-7211)
scaffold0209 (63-109)||(20619-20665)
[»] chr7 (2 HSPs)
chr7 (521-566)||(27308223-27308268)
chr7 (521-557)||(19278920-19278956)
[»] chr3 (1 HSPs)
chr3 (520-560)||(13077463-13077503)


Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 124 - 591
Target Start/End: Original strand, 22589509 - 22589980
Alignment:
Q  124 ctaatagtgatagcaatatttagagaccactccataaaatctaactttagactaaacaagacattagttagcttggtttccattctacaatttaaaggaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22589509 ctaatagtgatagcaatatttagagaccactccataaaatctaactttagactaaacaagacattagttagcttggtttccattctacaatttaaaggaa 22589608  T
Q  224 tcatagcaatgagcatatnnnnnnnnt-aattcataccatcatacagatggatccaccatcttttctgttctataaattgacagccctgcatacattcat 322  Q
    ||||||||||||||||||        | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22589609 tcatagcaatgagcatataaaaaaaattaattcataccatcatacatatggatccaccatcttttctgttctataaattgacagccctgcatacattcat 22589708  T
Q  323 aaacacgttccccacttctagttattcttccatactaatatttcttctatgcaatattcatttcacaaatattaaattgtttttagagaagagtaaaaag 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  22589709 aaacacgttccccacttctagttattcttccatactaatatttcttctatgcaatattcatttcacaaatattaaattgtttttagagaagagcaaaacg 22589808  T
Q  423 atagaactcacccaaatgaagaaaaaggataaaattctacaaatgagttttctaacacggcagcaggaattccggtacggctgctgaggtttccaacgcg 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22589809 atagaactcacccaaatgaagaaaaaggataaaattctacaaatgagttttctaacacggcggcaggaattccggtacggctgctgaggtttccaacgcg 22589908  T
Q  523 gtggtcgccggtcaaagttctccaatcccgaaataaattgggggtt---gttgtggacataatagagaataa 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  22589909 gtggtcgccggtcaaagttctccaatcccgaaataaattgggggttttggttgtggacataatagagaataa 22589980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 22589296 - 22589389
Alignment:
Q  16 ttttgttctaaattcacatttctctacatagtcaacactaaaatcatacagagtcaacactaaaatcaaatgctactgaaagacttcaaagata 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22589296 ttttgttctaaattcacatttctctacatagtcaacactaaaatcaaacagagtcaacactaaaatcaaatgctactgaaagacttcaaagata 22589389  T

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Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 124 - 591
Target Start/End: Complemental strand, 30935556 - 30935093
Alignment:
Q  124 ctaatagtgatagcaatatttagagaccactccataaaatctaactttagactaaacaagacattagttagcttggtttccattctacaatttaaaggaa 223  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30935556 ctaatagtgatagcaaaatttagagaccactccataaaatctaactttagactaaaaaagacattagttagcttggtttccattctacaatttaaaggaa 30935457  T
Q  224 tcatagcaatgagcatatnnnnnnnntaattcataccatcatacagatggatccaccatctttt-ctgttctataaattgacagccctgcatacattcat 322  Q
    ||||||||       |||        |||||| | |||||||||||||||||||||||| |||| |||||||||  ||||||||||||||||||||||||    
T  30935456 tcatagca-------tataaaaaaattaattcgttccatcatacagatggatccaccatttttttctgttctatgtattgacagccctgcatacattcat 30935364  T
Q  323 aaacacgttccccacttctagttattcttccatactaatatttcttctatgcaatattcatttcacaaatattaaattgtttttagagaagagtaaaaag 422  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30935363 aaacacgttccccacttctacttattcttccatactaatatttcttctatgcaatattcatttcacaaatattaaattgtttttagagaagagcaaaaag 30935264  T
Q  423 atagaactcacccaaatgaagaaaaaggataaaattctacaaatgagttttctaacacggcagcaggaattccggtacggctgctgaggtttccaacgcg 522  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| | |||||||||| |||||||||||||||||||||||||    
T  30935263 atagaactcacccaaatgaagaaaaaggataaaatgctacaattgagttttctgacacggc-ggaggaattccgatacggctgctgaggtttccaacgcg 30935165  T
Q  523 gtggtcgccggtcaaagttctccaatcccgaaataaattgggggtt---gttgtggacataatagagaataa 591  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||   |||||||||||||||||||||||    
T  30935164 gtggtcgccggtaaaagttctcgaatcccgaaataaattgggggttttggttgtggacataatagagaataa 30935093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 30936360 - 30936267
Alignment:
Q  16 ttttgttctaaattcacatttctctacatagtcaacactaaaatcatacagagtcaacactaaaatcaaatgctactgaaagacttcaaagata 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30936360 ttttgttctaaattcacatttctctacatagtcaacactaaaatcaaacagagtcaacactaaaatcaaatgctactgaaagacttcaaagata 30936267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 141 - 406
Target Start/End: Original strand, 34548115 - 34548354
Alignment:
Q  141 atttagagaccactccataaaatctaactttagactaaacaagacattagttagcttggtttccattctacaatttaaaggaatcatagcaatgagcata 240  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |           
T  34548115 atttagagaccactccataaaatctaactttagactaaaaaagacattagttaacttggtttccattctacaatttaaaggaatcatagcatt------- 34548207  T
Q  241 tnnnnnnnntaattcataccatcatacagatggatccaccatcttttctgttctataaattgacagccctgcatacattcataaacacgtt-ccccactt 339  Q
    |         ||||  | ||||||  ||||||||||||||||||||||||||||                  ||||||||||||||||||| ||||||||    
T  34548208 tcaagaaatcaatttcttccatca--cagatggatccaccatcttttctgttct------------------atacattcataaacacgttcccccactt 34548287  T
Q  340 ctagttattcttccatactaatatttcttctatgcaatattcatttcacaaatattaaattgttttt 406  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||    
T  34548288 ttagttattcttccatactaatattttttctatgcaatattcatttcacaaatattaatctgttttt 34548354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 4377019 - 4377065
Alignment:
Q  63 acagagtcaacactaaaatcaaatgctactgaaagacttcaaagata 109  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  4377019 acagagtcaacactaaaatcaaatgctactgaaagatttcaaagata 4377065  T

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Target: chr8 (Bit Score: 83; Significance: 5e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 15437487 - 15437577
Alignment:
Q  16 ttttgttctaaattcacatttctctacatagtcaacactaaaatcatacagagtcaacactaaaatcaaatgctactgaaagacttcaaag 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  15437487 ttttgttctaaattcacatttctctacatagtcaacactaaaatcaaacagagtcaacactaaaatcaaatgctactgaaagatttcaaag 15437577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 15528791 - 15528881
Alignment:
Q  16 ttttgttctaaattcacatttctctacatagtcaacactaaaatcatacagagtcaacactaaaatcaaatgctactgaaagacttcaaag 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  15528791 ttttgttctaaattcacatttctctacatagtcaacactaaaatcaaacagagtcaacactaaaatcaaatgctactgaaagatttcaaag 15528881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 8834571 - 8834617
Alignment:
Q  63 acagagtcaacactaaaatcaaatgctactgaaagacttcaaagata 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8834571 acagagtcaacactaaaatcaaatgctactgaaagacttcaaagata 8834617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 7211 - 7165
Alignment:
Q  63 acagagtcaacactaaaatcaaatgctactgaaagacttcaaagata 109  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  7211 acagagtcaacactaaaatcaaatgctactgaaagatttcaaagata 7165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 20665 - 20619
Alignment:
Q  63 acagagtcaacactaaaatcaaatgctactgaaagacttcaaagata 109  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  20665 acagagtcaacactaaaatcaaatgctactgaaagatttcaaagata 20619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 566
Target Start/End: Original strand, 27308223 - 27308268
Alignment:
Q  521 cggtggtcgccggtcaaagttctccaatcccgaaataaattggggg 566  Q
    ||||||| | |||| |||||||| ||||||||||||||||||||||    
T  27308223 cggtggttgacggtgaaagttcttcaatcccgaaataaattggggg 27308268  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 521 - 557
Target Start/End: Complemental strand, 19278956 - 19278920
Alignment:
Q  521 cggtggtcgccggtcaaagttctccaatcccgaaata 557  Q
    |||||||||||||| |||||||||||||||| |||||    
T  19278956 cggtggtcgccggtgaaagttctccaatcccaaaata 19278920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 520 - 560
Target Start/End: Original strand, 13077463 - 13077503
Alignment:
Q  520 gcggtggtcgccggtcaaagttctccaatcccgaaataaat 560  Q
    ||||||||||||||| |||||||||| ||||| ||||||||    
T  13077463 gcggtggtcgccggtgaaagttctccgatcccaaaataaat 13077503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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