View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_100 (Length: 247)
Name: NF5717_high_100
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_100 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 33711345 - 33711574
Alignment:
| Q |
1 |
ctacagcatgtaaattcagaaagnnnnnnnnttcaatacattttaacaaatatgcattcattactagtcaaggttgctaatagatttgatcattcnnnnn |
100 |
Q |
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| T |
33711345 |
ctacagcatgtaaattcagaaagaaaaaaaattcaatacattttaactaatatgcattcattactactcaaggttgctaatagattagatcattcttttt |
33711444 |
T |
|
| Q |
101 |
nnattatttaccaaatttaaattaattaaacactcaagtcaaagaagaaaagaaacaaaagttatacaataacttcaagaaacaatatcaaacaaagaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33711445 |
ttattatttaccaaatttaaattaattaaacactcaagtcaaagaagaaaagaaacaaaagttatacaataacttcaagaaacaatatcaaacaaagaat |
33711544 |
T |
|
| Q |
201 |
aattttacagtaagaaacataatatgtagg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
33711545 |
aattttacagtaagaaacataatatgtagg |
33711574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 5768909 - 5768859
Alignment:
| Q |
179 |
gaaacaatatcaaacaaagaataattttacagtaagaaacataatatgtag |
229 |
Q |
| |
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||||||||||||||||||| |||| || | | ||||||||||||||||||| |
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| T |
5768909 |
gaaacaatatcaaacaaaggataacttcaaaataagaaacataatatgtag |
5768859 |
T |
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