View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_103 (Length: 245)
Name: NF5717_high_103
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_103 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 54215374 - 54215592
Alignment:
| Q |
15 |
cacattcaccaaagcttaattgctcctccatttctaaaaatctaatatattgcatactatcagtatacaagattaaagcaattgttgaaattaagttaga |
114 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54215374 |
cacattcaccaaagcttaattgctcctccttttctaaaaatctaatatattgcatactatcagtatacaagattaaagcaattgttgaaattaagttaga |
54215473 |
T |
|
| Q |
115 |
tcctagtagtttgcttcnnnnnnngaaactcatggaattgaatgttggtattgtgtaggggttcacgcctcttatatcagtggacgggttacatcagtta |
214 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54215474 |
tcctagtagtttgcatc-aaaaaagaaactcatggaattgaatgttggtattgtgtaggggttcacgcctcttatatcagtggacgggttacatcagtta |
54215572 |
T |
|
| Q |
215 |
catattttcattttcttctt |
234 |
Q |
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|||||||||||||||||||| |
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| T |
54215573 |
catattttcattttcttctt |
54215592 |
T |
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