View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_107 (Length: 240)
Name: NF5717_high_107
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_107 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 10746402 - 10746180
Alignment:
| Q |
18 |
tcttgctggtgagataaacataaattttatatgcttatttgaatcataactaactcattaattgcttatgcaattataatttgatatttcgaattataat |
117 |
Q |
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| T |
10746402 |
tcttgctggtgagataaacataaattttatatgcttatttgaatcataactaactcattaattgcttatgcaattataatttgatatttcgaattataat |
10746303 |
T |
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| Q |
118 |
gggcttctacttcatttgaatttcaggttttcgcactcataattagtaattaaagctaacaagctggatgatgcagttggaagcagatgtggagattctt |
217 |
Q |
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| T |
10746302 |
gggcttctacttcatttgaatttcaggttttcgcactcataattagtaattaaagctaacaagctggatgatgcagttggaagcagatgtggagattctt |
10746203 |
T |
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| Q |
218 |
agtttactactttgttattcatt |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
10746202 |
agtttactactttgttattcatt |
10746180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 10716323 - 10716273
Alignment:
| Q |
52 |
ttatttgaatcataactaactcattaattgcttatgcaattataatttgat |
102 |
Q |
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| T |
10716323 |
ttatttgaataataactaactctataattgcttatggaattataatttgat |
10716273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 10612574 - 10612619
Alignment:
| Q |
42 |
ttttatatgcttatttgaatcataactaactcattaattgcttatg |
87 |
Q |
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| T |
10612574 |
ttttatatatttatttgaatcataactaactcaataattgtttatg |
10612619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 10565842 - 10565925
Alignment:
| Q |
18 |
tcttgctggtgagataaacataaattttatatgcttatttgaatcataactaactcattaattgcttatgcaattataatttgat |
102 |
Q |
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| T |
10565842 |
tcttgctggtgagataaactgatatttt-tatgtgtattcgaatcataactaaatcattatttggttatggagttatcatttgat |
10565925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 10605619 - 10605674
Alignment:
| Q |
45 |
tatatgcttatttgaatcataactaactcattaattgcttatgcaattataatttga |
101 |
Q |
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| T |
10605619 |
tatatgcttatttgaatcat-acaaagtcgttaattgcttatggaattaaaatttga |
10605674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 12949464 - 12949519
Alignment:
| Q |
44 |
ttatatgcttatttgaatcataactaactcattaattgcttatgcaattataattt |
99 |
Q |
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| T |
12949464 |
ttatatgcttatttgaatcataaccaactcattaattgcttatgaaattagaattt |
12949519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 18555937 - 18555984
Alignment:
| Q |
52 |
ttatttgaatcataactaactcattaattgcttatgcaattataattt |
99 |
Q |
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| T |
18555937 |
ttatttgaatcataactaactcattaattgcttatggaattagaattt |
18555984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 12958931 - 12958978
Alignment:
| Q |
52 |
ttatttgaatcataactaactcattaattgcttatgcaattataattt |
99 |
Q |
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| T |
12958931 |
ttatttgaatcataactaactcattaattggttatggaattagaattt |
12958978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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