View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_109 (Length: 239)
Name: NF5717_high_109
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_109 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 5773972 - 5773751
Alignment:
| Q |
7 |
taataataataattggaaaatgctagttatcacggttaatttgtcagtcgaaagcgaagaattaatctgagaatctcgtcttaattcttcgctttcttgc |
106 |
Q |
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| T |
5773972 |
taataataataataggaaaacgctagttatcacagtcaatttgtcagacgaaagcgaagaattaatctgagcatctcgtcttaattcttcgctttcttgt |
5773873 |
T |
|
| Q |
107 |
ctataattttgataaacaatatcactgctcgatc----ataataaaaacaacaataataataagtttaccagatccgaaggtgaagagagtaaacaaagc |
202 |
Q |
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||||||||||||||||||||||||| |||||||| |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5773872 |
ctataattttgataaacaatatcaccgctcgatcatatataatataaacaacaatagtaataagtttaccagatccgtaggtgaagagagtaaacaaagc |
5773773 |
T |
|
| Q |
203 |
tgccacgattaagagagtgttt |
224 |
Q |
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|||||||||||||||||||||| |
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| T |
5773772 |
tgccacgattaagagagtgttt |
5773751 |
T |
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