View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_114 (Length: 237)
Name: NF5717_high_114
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_114 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31036615 - 31036394
Alignment:
| Q |
1 |
atgccgtcattttgtaaattgttgccaagttaaaattgatcaattattttttgcaaaagctatcacatacgacagttggagatttaaatagtacttgaaa |
100 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31036615 |
atgccgtcattttgcaaattgttgccaagttcaaattgatcaattattttttgcaaaagctatcacatacgacagttggagatttaaatagtacttgaaa |
31036516 |
T |
|
| Q |
101 |
tgatgttaataagcttgttattccatctaaaaataatgctaaaacttttaaagaaaatgcttcatgatatcattattatgatactcgaagtggtcatttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31036515 |
tgatgttaataagcttgttattccatctaaaaataatgctacaactcttaaagaaaatgcttcatgatatcattattatgatactcgaagtggtcatttg |
31036416 |
T |
|
| Q |
201 |
ctttaaaaattagcatcaatcc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
31036415 |
ctttaaaaattagcatcaatcc |
31036394 |
T |
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