View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_115 (Length: 237)
Name: NF5717_high_115
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_115 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 42276954 - 42277176
Alignment:
| Q |
15 |
atatagatctccaaatctaaaaaccaagctgattaaaattgttgaaattgaacatttgagttgactctagtgtttgtcacgatcaatttgcaagggaagg |
114 |
Q |
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| T |
42276954 |
atatagttctccaaatctaaaaaccaagctgattaaaattgttgaaattgaacatttgagttgactctagtgtttgtcacgatcaatttgcaagagaagg |
42277053 |
T |
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| Q |
115 |
accaaatttgacatgtaaatcaaaatatttgataaaagaattagtgtgcatgttcatcacctgatgtacagagaaaaatactaaataaattatatattca |
214 |
Q |
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| T |
42277054 |
accaaatttgacatgtaaatcaaaatatttgataaaagaattagtgtgcatgttcatcacctgatgtacagagaaaaatactaaataaattatatattca |
42277153 |
T |
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| Q |
215 |
tggatggtcaactgagagttagc |
237 |
Q |
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| T |
42277154 |
tggatggtcaactgagagttagc |
42277176 |
T |
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