View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5717_high_117 (Length: 236)
Name: NF5717_high_117
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_117 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 47377102 - 47376877
Alignment:
| Q |
1 |
tatgtgcttatctaatttgcttcacgtagagaaattatagtatatagttcaatgtgctgacacacttactttctccctaccaattgtttggattttgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47377102 |
tatgtgcttatctaatttgcttcacgtagagaaattatagtatatagttcaatgtgctgacacacttactttctccctaccaattgtttggattttgaat |
47377003 |
T |
|
| Q |
101 |
ctattctgaatatggagataaacagagaataaatagttgaagttgaaatatttaaatcatcatcaaaatatgtgggtcttactttaggtaggaggaaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47377002 |
ctattctgaatatggagataaacagagaataaatagttgaagttaaaatatttaaatcatcatcaaaatatgtgggtcttactttaggtaggaggaaatt |
47376903 |
T |
|
| Q |
201 |
tgtggtatgcagactttgtatctgtg |
226 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
47376902 |
tgtggtatgcagactttgtatttgtg |
47376877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University