View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5717_high_119 (Length: 235)

Name: NF5717_high_119
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5717_high_119
NF5717_high_119
[»] chr3 (8 HSPs)
chr3 (1-219)||(11496068-11496286)
chr3 (14-211)||(11489601-11489798)
chr3 (18-219)||(5967276-5967477)
chr3 (14-219)||(2920984-2921186)
chr3 (14-58)||(4113629-4113673)
chr3 (14-67)||(4131408-4131461)
chr3 (14-54)||(4059160-4059200)
chr3 (14-54)||(4078769-4078809)
[»] chr1 (1 HSPs)
chr1 (1-219)||(17313182-17313400)
[»] chr8 (1 HSPs)
chr8 (14-219)||(18389477-18389682)
[»] scaffold0603 (1 HSPs)
scaffold0603 (18-219)||(3278-3479)
[»] chr5 (1 HSPs)
chr5 (14-222)||(16448238-16448443)
[»] chr4 (1 HSPs)
chr4 (16-136)||(5989984-5990104)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 11496286 - 11496068
Alignment:
Q  1 gtggatacagcactccaaattggttgggtgattttttatttggcaacatggtgtatttaaggatctcgaattttgacaagtgtatatggcttccacccct 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  11496286 gtggatacagcattccaaattggttgggtgattttttatttggcaacatggtgtatttaaggatctcgaatttcgataagtgtatatggcttccacccct 11496187  T
Q  101 tggacaattgggaaatttgaaagaactcattattgattcgatgctttcaataaagagtgttagcacagagttctacggaagtgatggttctccttcattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  11496186 tggacaattgggaaatttgaaagaactcattattgattcgatgctttcaataaagagtgttggcacagagttctacggaagtgatagttctccttcattt 11496087  T
Q  201 caaccatttccctccttgg 219  Q
    |||||||||||||||||||    
T  11496086 caaccatttccctccttgg 11496068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 11489798 - 11489601
Alignment:
Q  14 tccaaattggttgggtgattttttatttggcaacatggtgtatttaaggatctcgaattttgacaagtgtatatggcttccaccccttggacaattggga 113  Q
    |||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||| |||| | ||| |||||||||||||||||||| |||||||     
T  11489798 tccaaattggatgggtgattttttatttagcaacatggtgtacttaaggatctcgaattgtgacgattgtttatggcttccaccccttggaaaattgggt 11489699  T
Q  114 aatttgaaagaactcattattgattcgatgctttcaataaagagtgttagcacagagttctacggaagtgatggttctccttcatttcaaccatttcc 211  Q
    ||| ||||| | |||||||||||   |||||  ||| || |||   || | || |||||||| ||||||||||||||||||| |||||||||||||||    
T  11489698 aatctgaaaaacctcattattgaagggatgcaatcagtacagacaattggtactgagttctatggaagtgatggttctcctttatttcaaccatttcc 11489601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 5967276 - 5967477
Alignment:
Q  18 aattggttgggtgattttttatttggcaacatggtgtatttaaggatctcgaattttgacaagtgtatatggcttccaccccttggacaattgggaaatt 117  Q
    |||||||| |||||||  ||||||  ||||||| ||||||||||||||||||||| ||   | ||| |||||||||||||||||||||||||||| |||     
T  5967276 aattggttaggtgattcgttatttaccaacatgatgtatttaaggatctcgaattgtggtgattgtttatggcttccaccccttggacaattgggtaatc 5967375  T
Q  118 tgaaagaactcattattgattcgatgctttcaataaagagtgttagcacagagttctacggaagtgatggttctccttcatttcaaccatttccctcctt 217  Q
    |||||||||||||||||||   |||||  || ||| |||   || | || |||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  5967376 tgaaagaactcattattgaagggatgcaatccatacagataattggtactgagttctatggaagtgatagttctccttcatttcaaccatttccctcctt 5967475  T
Q  218 gg 219  Q
    ||    
T  5967476 gg 5967477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 2920984 - 2921186
Alignment:
Q  14 tccaaattggttgggtgattttttatttggcaacatggtgtatttaaggatctcgaattttgacaagtgtatatggcttccaccccttggacaattggga 113  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||| ||| || ||| ||||||||||||| || || |||||| |     
T  2920984 tccaaattggttgggtgatttttcatttagcaacatggtgtatttaaggatctcaaattgtgataattgtttatggcttccaccgctcggtcaattgagt 2921083  T
Q  114 aatttgaaagaactcattattgattcgatgctttcaataaagagtgttagcacagagttctacggaagtgatggttctccttcatttcaaccatttccct 213  Q
    ||| ||||||||||||| |||||   |||||  ||| || |     || | || |||||||| |||||||||| ||   |||||||||||||||||||||    
T  2921084 aatctgaaagaactcataattgaagagatgcaatcagtacaagcaattggtactgagttctatggaagtgatgttt---cttcatttcaaccatttccct 2921180  T
Q  214 ccttgg 219  Q
    ||||||    
T  2921181 ccttgg 2921186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 4113673 - 4113629
Alignment:
Q  14 tccaaattggttgggtgattttttatttggcaacatggtgtattt 58  Q
    ||||||||||||||||| || ||||||||||||||||||||||||    
T  4113673 tccaaattggttgggtggttctttatttggcaacatggtgtattt 4113629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 4131408 - 4131461
Alignment:
Q  14 tccaaattggttgggtgattttttatttggcaacatggtgtatttaaggatctc 67  Q
    ||||||||||||||||  || |||||||||||||||||||| ||| || |||||    
T  4131408 tccaaattggttgggtagttctttatttggcaacatggtgtgtttgagaatctc 4131461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 4059200 - 4059160
Alignment:
Q  14 tccaaattggttgggtgattttttatttggcaacatggtgt 54  Q
    ||||| ||||||||||| || ||||||||||||||||||||    
T  4059200 tccaagttggttgggtggttctttatttggcaacatggtgt 4059160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 4078809 - 4078769
Alignment:
Q  14 tccaaattggttgggtgattttttatttggcaacatggtgt 54  Q
    ||||| ||||||||||| || ||||||||||||||||||||    
T  4078809 tccaagttggttgggtggttctttatttggcaacatggtgt 4078769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 17313182 - 17313400
Alignment:
Q  1 gtggatacagcactccaaattggttgggtgattttttatttggcaacatggtgtatttaaggatctcgaattttgacaagtgtatatggcttccacccct 100  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||    
T  17313182 gtggattcagcattccaaattggttgggtgattttttatttggcaacatggtgtatttaaggatctcgaattgtgataagtgtatatggcttccatccct 17313281  T
Q  101 tggacaattgggaaatttgaaagaactcattattgattcgatgctttcaataaagagtgttagcacagagttctacggaagtgatggttctccttcattt 200  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    ||||||| |||    
T  17313282 tggaaaattgggtaatttgaaagaactcattattgattcgatgctttcaataaagagtgttggtacagagttctacggaagtgataaccctccttctttt 17313381  T
Q  201 caaccatttccctccttgg 219  Q
    |||||||||||||||||||    
T  17313382 caaccatttccctccttgg 17313400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 18389477 - 18389682
Alignment:
Q  14 tccaaattggttgggtgattttttatttggcaacatggtgtatttaaggatctcgaattttgacaagtgtatatggcttccaccccttggacaattggga 113  Q
    |||||||||||||||||||  | ||||||| |||||| |||||||||| ||||| |||| || ||| ||| ||||||||||| ||||||||||||||||     
T  18389477 tccaaattggttgggtgataatgtatttggaaacatgttgtatttaagaatctcaaattgtgtcaattgtctatggcttccatcccttggacaattgggt 18389576  T
Q  114 aatttgaaagaactcattattgattcgatgctttcaataaagagtgttagcacagagttctacggaagtgatggttctccttcatttcaaccatttccct 213  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||||||| | |||||||| || |||| |||||||  |||||||||||||||||||||||    
T  18389577 aatttgaaagaactcgttattgattcgttgctttccataaagagtgttggtacagagttttatggaaatgatggtcatccttcatttcaaccatttccct 18389676  T
Q  214 ccttgg 219  Q
    | ||||    
T  18389677 cattgg 18389682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 3479 - 3278
Alignment:
Q  18 aattggttgggtgattttttatttggcaacatggtgtatttaaggatctcgaattttgacaagtgtatatggcttccaccccttggacaattgggaaatt 117  Q
    |||||||| |||||||  |||||| ||||||||||||||||||||||||| |||| |    | ||| ||||||||||||| ||||| |||||||| |||     
T  3479 aattggtttggtgattccttatttagcaacatggtgtatttaaggatctcaaattgtagtgattgtttatggcttccacctcttgggcaattgggtaatc 3380  T
Q  118 tgaaagaactcattattgattcgatgctttcaataaagagtgttagcacagagttctacggaagtgatggttctccttcatttcaaccatttccctcctt 217  Q
    ||||| |||||||||||||   |||||  ||| || |||   || | || |||||||| ||||||||  ||||| |||||||||||||||||||||||||    
T  3379 tgaaaaaactcattattgaagagatgcaatcagtagagataattggtactgagttctatggaagtgactgttcttcttcatttcaaccatttccctcctt 3280  T
Q  218 gg 219  Q
    ||    
T  3279 gg 3278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 16448238 - 16448443
Alignment:
Q  14 tccaaattggttgggtgattttttatttggcaacatggtgtatttaaggatctcgaattttgacaagtgtatatggcttccaccccttggacaattggga 113  Q
    ||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||| |||    ||| |||||||||| ||||||||||| |||||     
T  16448238 tccaaattggttgggtgatattttatttagcaacatgatgtctttaaggatctcgaattgtgatgcttgtttatggcttcctccccttggacagttgggt 16448337  T
Q  114 aatttgaaagaactcattattgattcgatgctttcaataaagagtgttagcacagagttctacggaagtgatggttctccttcatttcaaccatttccct 213  Q
    ||| | ||||| ||||||||| |   |||||  |||||| |||   || | || |||||||| ||||||||| | |   |||||||||||||||| ||||    
T  16448338 aatctaaaagagctcattattaaagggatgcaatcaatacagacaattggtactgagttctatggaagtgatcggt---cttcatttcaaccattcccct 16448434  T
Q  214 ccttggtga 222  Q
    |||||||||    
T  16448435 ccttggtga 16448443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 5989984 - 5990104
Alignment:
Q  16 caaattggttgggtgattttttatttggcaacatggtgtatttaaggatctcgaattttgacaagtgtatatggcttccaccccttggacaattgggaaa 115  Q
    |||||||||| ||||||| ||||||| | || |||||||||||||||||||| | || |||  | ||| |||||||||| ||||||||||||||||| ||    
T  5989984 caaattggttaggtgattctttatttagaaatatggtgtatttaaggatctcaagttgtgatcattgtttatggcttcccccccttggacaattgggtaa 5990083  T
Q  116 tttgaaagaactcattattga 136  Q
    | ||||| |||||||||||||    
T  5990084 tctgaaaaaactcattattga 5990104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University