View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_124 (Length: 219)
Name: NF5717_high_124
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_124 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 4191265 - 4191114
Alignment:
| Q |
45 |
cctcatcctccccgccattctccatttggtctccccagcttgagcagcctcaaaacactctttctttgcagcttcacgctcttctgcagtaaatgctcct |
144 |
Q |
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| T |
4191265 |
cctcatcctccccgccattctccatttggtctccccagcttgagcagcctcaaaacact--ttctttgcagcttcacgctcttctgcagtaaatgctcct |
4191168 |
T |
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| Q |
145 |
tgatcactctcaatcaccaccaaaagtttccgtttgggttgcagcacaaatttc |
198 |
Q |
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| T |
4191167 |
tgatcactctcaatcacaaccaaaagtttccgtttgggttgcagcacaaatttc |
4191114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 76 - 202
Target Start/End: Complemental strand, 52210774 - 52210648
Alignment:
| Q |
76 |
tccccagcttgagcagcctcaaaacactctttctttgcagcttcacgctcttctgcagtaaatgctccttgatcactctcaatcaccaccaaaagtttcc |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52210774 |
tccccagcttgagcagcctcaaaacactctttctttgcagcttcacgctcttctgcagtaaatgctccttgatcactctcaatcaccaccaaaagtttcc |
52210675 |
T |
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| Q |
176 |
gtttgggttgcagcacaaatttcctag |
202 |
Q |
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| T |
52210674 |
gtttgggttgcagcacaaatttcctag |
52210648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 76
Target Start/End: Complemental strand, 52210824 - 52210793
Alignment:
| Q |
45 |
cctcatcctccccgccattctccatttggtct |
76 |
Q |
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| T |
52210824 |
cctcatcctccccgccattctccatttggtct |
52210793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 47716534 - 47716658
Alignment:
| Q |
76 |
tccccagcttgagcagcctcaaaacactctttctttgcagcttcacgctcttctgcagtaaatgctccttgatcactctcaatcaccaccaaaagtttcc |
175 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
47716534 |
tccccagcatgagcagcctcaaaacactctttccttgcagcttcacgctcttctgctgtaagtgctccttgatcactctcaatcaccaccagaagtttcc |
47716633 |
T |
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| Q |
176 |
gtttgggttgcagcacaaatttcct |
200 |
Q |
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|||| |||||||||||||||||||| |
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| T |
47716634 |
gttttggttgcagcacaaatttcct |
47716658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 47857549 - 47857425
Alignment:
| Q |
76 |
tccccagcttgagcagcctcaaaacactctttctttgcagcttcacgctcttctgcagtaaatgctccttgatcactctcaatcaccaccaaaagtttcc |
175 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| | |
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| T |
47857549 |
tccccagtctgagcagcctcaaaacactctttccttgcagcttcacgctcttttgcagtaagtgctccttgatcactctcaatcaccaccagaagttttc |
47857450 |
T |
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| Q |
176 |
gtttgggttgcagcacaaatttcct |
200 |
Q |
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|||| ||||||||||| |||||||| |
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| T |
47857449 |
gtttcggttgcagcaccaatttcct |
47857425 |
T |
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