View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_128 (Length: 204)
Name: NF5717_high_128
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_128 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 8e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 46360047 - 46359838
Alignment:
| Q |
1 |
tatctgcgttattgccacttccctatatatccatgggctccatttcctctagctgctctcttgccattttgcaatccatatccatcaagcgaagatggtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46360047 |
tatctgcgttattgccacttccctatatatccatgggctccatttcctctagctgctctcttgccattttgcaatccatatccatcaagcgaagattgtg |
46359948 |
T |
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| Q |
101 |
gatcaacttgtgatattcatcaagattggtgtgggagacaccaaaatccttcatctgagtca------ataactcgagagcaccatcaaatttctctagc |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46359947 |
gatcaacttgtgatattcatcaagattggtgtgggagacaccaaaatccttcatctgagtcaatatatataactcgagagcaccatcaaatttctctagc |
46359848 |
T |
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| Q |
195 |
tcgcaatatc |
204 |
Q |
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| |||||||| |
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| T |
46359847 |
ttgcaatatc |
46359838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 44461238 - 44461039
Alignment:
| Q |
1 |
tatctgcgttattgccacttccctatatatccatgggctccatttcctctagctgctctcttgccattttgcaatccatatccatcaagcgaagatggtg |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44461238 |
tatctgcgttattgccacttccctat----ccatgggctccatttcctctagctgctcccttgccattttgcaatccatatccatcaagcgaagatagtg |
44461143 |
T |
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| Q |
101 |
gatcaacttgtgatattcatcaagattggtgtgggagacaccaaaatccttcatctgagtcaataactcgagagcaccatcaaatttctctagctcgcaa |
200 |
Q |
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| T |
44461142 |
gatcaacttgtgatattcatcaagattggtgtgggagacaccaaaatccttcatctgagtcaataactcgagagcaccatcaaatttctctagcttgcaa |
44461043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 44468771 - 44468572
Alignment:
| Q |
1 |
tatctgcgttattgccacttccctatatatccatgggctccatttcctctagctgctctcttgccattttgcaatccatatccatcaagcgaagatggtg |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44468771 |
tatctgcgttattgccacttccctat----ccatgggctccatttcctctagctgctcccttgccattttgcaatccatatccatcaagcgaagatagtg |
44468676 |
T |
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| Q |
101 |
gatcaacttgtgatattcatcaagattggtgtgggagacaccaaaatccttcatctgagtcaataactcgagagcaccatcaaatttctctagctcgcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44468675 |
gatcaacttgtgatattcatcaagattggtgtgggagacaccaaaatccttcatctgagtcaataactcgagagcaccatcaaatttctctagcttgcaa |
44468576 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 204
Target Start/End: Original strand, 34501480 - 34501656
Alignment:
| Q |
28 |
tatccatgggctccatttcctctagctgctctcttgccattttgcaatccatatccatcaagcgaagatggtggatcaacttgtgatattcatcaagatt |
127 |
Q |
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||||||| |||||||||||||||| ||| |||||||||||||| |||||| |||||||| |||| |||||||||||| ||||||||||||||||| |
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| T |
34501480 |
tatccataggctccatttcctctaactgttctcttgccatttttatatccatggccatcaaggaaagagagtggatcaacttctgatattcatcaagatt |
34501579 |
T |
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| Q |
128 |
ggtgtgggagacaccaaaatccttcatctgagtcaataactcgagagcaccatcaaatttctctagctcgcaatatc |
204 |
Q |
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| T |
34501580 |
tatgtgggagacaccaaaatccttcatccgagtcaatgacttgagagcgatatcaaatttctgtagcctgcaatatc |
34501656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 6e-36; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 28 - 204
Target Start/End: Original strand, 38604184 - 38604360
Alignment:
| Q |
28 |
tatccatgggctccatttcctctagctgctctcttgccattttgcaatccatatccatcaagcgaagatggtggatcaacttgtgatattcatcaagatt |
127 |
Q |
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||||||| ||||||||||||||||||||| || ||| |||||| | ||||||| || |||||| |||| |||||| ||||||||| |||||||||||| |
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| T |
38604184 |
tatccataggctccatttcctctagctgcactattgtcattttcctatccatagccttcaagcaaagagagtggattaacttgtgaagttcatcaagatt |
38604283 |
T |
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| Q |
128 |
ggtgtgggagacaccaaaatccttcatctgagtcaataactcgagagcaccatcaaatttctctagctcgcaatatc |
204 |
Q |
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|||| |||||||||||||| |||||||||||||||||||| |||||| |||||| || | ||||| |||||||| |
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| T |
38604284 |
ggtgcaggagacaccaaaattcttcatctgagtcaataacttgagagccttatcaaaattatgtagcttgcaatatc |
38604360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 204
Target Start/End: Complemental strand, 41584177 - 41584011
Alignment:
| Q |
38 |
ctccatttcctctagctgctctcttgccattttgcaatccatatccatcaagcgaagatggtggatcaacttgtgatattcatcaagattggtgtgggag |
137 |
Q |
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||||||| |||||||||||| ||||| |||||| | || |||| || ||||| ||||| ||||| ||||| |||||| ||||||||| ||| |||| |
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| T |
41584177 |
ctccattgcctctagctgctttcttgacattttcctattcatagccttcaagtgaagagagtggaagaacttacgatatttatcaagattagtgaaggag |
41584078 |
T |
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| Q |
138 |
acaccaaaatccttcatctgagtcaataactcgagagcaccatcaaatttctctagctcgcaatatc |
204 |
Q |
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|||||||| |||||||||| ||||||||| |||||| |||||||||||| |||| |||||||| |
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| T |
41584077 |
acaccaaagtccttcatctagctcaataacttgagagcctcatcaaatttctgtagcctgcaatatc |
41584011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 165
Target Start/End: Complemental strand, 41619941 - 41619849
Alignment:
| Q |
72 |
caatccatatccatcaagcgaagatggtggatcaacttgtgatattcatcaagattggtgtgggagacaccaaaatccttcatctgagtcaata |
165 |
Q |
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||||||| |||| ||||||||||| ||| |||| | |||||||||||| ||||||||| | |||||||||||||||||| | |||||||||| |
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| T |
41619941 |
caatccaaatccttcaagcgaagaaaatggttcaattagtgatattcatccagattggtgcgagagacaccaaaatccttc-tttgagtcaata |
41619849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 9160500 - 9160420
Alignment:
| Q |
85 |
tcaagcgaagatggtggatcaacttgtgatattcatcaagattggtgtgggagacaccaaaatccttcatctgagtcaataact |
168 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||| | ||||| ||||||||||||||||| ||||||||||| |
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| T |
9160500 |
tcaagcgaagagagtggatcaacttgtgatattcataaagattcat---ggagaaaccaaaatccttcatctcagtcaataact |
9160420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 9161622 - 9161522
Alignment:
| Q |
28 |
tatccatgggctccatttcctctagctgctctcttgccattttgcaatccatatccatcaagcgaagatggtggatcaacttgtgatattcatcaagatt |
127 |
Q |
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||||||| ||||||||||| || || ||||||||| | ||| | ||||||| || ||||| |||| ||||| |||||||||||||||||||||||| |
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| T |
9161622 |
tatccataggctccatttcttccaggtgctctcttattaatttcctatccatagccttcaagaaaagagagtggaccaacttgtgatattcatcaagatt |
9161523 |
T |
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| Q |
128 |
g |
128 |
Q |
| |
|
| |
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|
| T |
9161522 |
g |
9161522 |
T |
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