View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_17 (Length: 532)
Name: NF5717_high_17
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 30386243 - 30386640
Alignment:
| Q |
1 |
ttaaggttgttgataatgatgtcacaccagattttggttgggtgaatgagctgctgatgtagatcatacaatgacaacaaagctgctgatgttgatgata |
100 |
Q |
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| T |
30386243 |
ttaaggttgttgataatgatgtcacaccagattttggttgggtgaatgagctgctgatgtagatcatacaatgacaacaaagctgctgatgttgatgata |
30386342 |
T |
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| Q |
101 |
attatgtgaattcatggtgatttattattttagtaattaatttgagtnnnnnnnnnnggtaagtaattaagtgtagatatggttatgtgatcatgtgact |
200 |
Q |
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| T |
30386343 |
attatgtgaattcatggtgatttattatttcagtaattaatttgagtaaaaaaaaaag-taagtaattaagtgtagatatggttatgtgatcatgtgact |
30386441 |
T |
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| Q |
201 |
aacatatgatccttaattggcttgcttagcctctatttccaattgtaattcaattcttgttcatttctagtttattactttctgaatttgtaagtttgtg |
300 |
Q |
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| T |
30386442 |
aacatatgatccttaattggcttgcttagcctctatttccaattgtaattcaattcttgttcatttctagtttattactttctgaatttgtaagtttgtg |
30386541 |
T |
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| Q |
301 |
aaaattaatcaaattatgtaannnnnnnatttcattaatttaattagatttcatgaatcttgttttttgtgtggaaaaggaatggactaattgactaatg |
400 |
Q |
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| T |
30386542 |
aaaattaatcaaattatgtaa-ttttttatttcattaatttaattagatttcatgaatcttgttttttgtgtggaaaaggaatggactaa-tgactaatg |
30386639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 516
Target Start/End: Original strand, 30386716 - 30386749
Alignment:
| Q |
483 |
gcttagatttatcttgttcttattacgtggtaag |
516 |
Q |
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| T |
30386716 |
gcttagatttatcttgttcttattacgtggtaag |
30386749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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