View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5717_high_20 (Length: 497)

Name: NF5717_high_20
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5717_high_20
NF5717_high_20
[»] scaffold0036 (1 HSPs)
scaffold0036 (6-481)||(3007-3498)
[»] chr3 (23 HSPs)
chr3 (8-145)||(35273659-35273797)
chr3 (61-145)||(20115460-20115544)
chr3 (355-481)||(16985944-16986070)
chr3 (402-481)||(53505069-53505148)
chr3 (6-143)||(1231652-1231790)
chr3 (164-227)||(1646066-1646130)
chr3 (23-147)||(15244200-15244323)
chr3 (402-481)||(21736862-21736941)
chr3 (408-457)||(43182730-43182779)
chr3 (46-94)||(10868226-10868274)
chr3 (25-125)||(21735221-21735321)
chr3 (46-94)||(21739992-21740040)
chr3 (402-458)||(42830578-42830634)
chr3 (25-81)||(53504676-53504732)
chr3 (406-457)||(299345-299396)
chr3 (8-101)||(1646206-1646300)
chr3 (25-147)||(15205181-15205301)
chr3 (6-100)||(16176204-16176298)
chr3 (28-98)||(36731528-36731598)
chr3 (402-456)||(39051555-39051609)
chr3 (402-455)||(12214731-12214784)
chr3 (46-95)||(14863934-14863983)
chr3 (402-455)||(35273348-35273401)
[»] chr2 (21 HSPs)
chr2 (7-99)||(1842125-1842217)
chr2 (6-125)||(26245980-26246099)
chr2 (6-116)||(32488333-32488444)
chr2 (370-478)||(20213786-20213893)
chr2 (46-122)||(42183233-42183309)
chr2 (6-125)||(45717744-45717864)
chr2 (402-481)||(44602663-44602742)
chr2 (25-117)||(22863912-22864004)
chr2 (318-481)||(32487955-32488119)
chr2 (6-101)||(40903600-40903696)
chr2 (328-454)||(26246317-26246444)
chr2 (6-111)||(33411534-33411640)
chr2 (6-98)||(18697834-18697927)
chr2 (6-113)||(24220213-24220321)
chr2 (402-457)||(2467925-2467980)
chr2 (86-145)||(3251191-3251250)
chr2 (402-455)||(4276690-4276743)
chr2 (415-467)||(5663479-5663531)
chr2 (46-94)||(11233959-11234007)
chr2 (402-458)||(12564791-12564847)
chr2 (46-122)||(45702342-45702418)
[»] chr7 (15 HSPs)
chr7 (6-147)||(13063244-13063386)
chr7 (6-101)||(39465013-39465109)
chr7 (402-458)||(7690728-7690784)
chr7 (6-145)||(44363086-44363226)
chr7 (328-454)||(32468835-32468962)
chr7 (402-456)||(25987654-25987708)
chr7 (17-125)||(18144914-18145023)
chr7 (402-458)||(6800220-6800276)
chr7 (402-481)||(47801272-47801351)
chr7 (405-458)||(7634979-7635032)
chr7 (17-101)||(18133150-18133235)
chr7 (402-455)||(27293456-27293509)
chr7 (46-94)||(19735141-19735189)
chr7 (426-458)||(21376289-21376321)
chr7 (402-454)||(27000142-27000194)
[»] chr1 (16 HSPs)
chr1 (6-143)||(13112716-13112854)
chr1 (20-122)||(19579951-19580053)
chr1 (17-125)||(14976134-14976243)
chr1 (328-454)||(14976461-14976588)
chr1 (399-481)||(4534488-4534570)
chr1 (25-125)||(11649755-11649855)
chr1 (402-458)||(14794712-14794768)
chr1 (25-89)||(20796285-20796349)
chr1 (6-89)||(32303804-32303888)
chr1 (402-454)||(45814532-45814584)
chr1 (6-104)||(751432-751531)
chr1 (46-113)||(18591667-18591734)
chr1 (398-481)||(31912334-31912417)
chr1 (344-454)||(34504389-34504500)
chr1 (6-116)||(16586625-16586735)
chr1 (402-466)||(17404525-17404589)
[»] chr8 (11 HSPs)
chr8 (6-145)||(25320383-25320523)
chr8 (17-83)||(43249244-43249310)
chr8 (6-145)||(20128845-20128985)
chr8 (402-455)||(21313010-21313063)
chr8 (46-122)||(442356-442432)
chr8 (402-454)||(3773691-3773743)
chr8 (402-454)||(13448831-13448883)
chr8 (46-94)||(24794369-24794417)
chr8 (421-481)||(38921679-38921739)
chr8 (6-100)||(25109111-25109206)
chr8 (402-455)||(23447614-23447667)
[»] chr6 (13 HSPs)
chr6 (6-98)||(13214812-13214905)
chr6 (10-126)||(31292494-31292610)
chr6 (8-116)||(2821842-2821950)
chr6 (402-481)||(1727744-1727823)
chr6 (408-455)||(29359650-29359697)
chr6 (404-454)||(13413312-13413362)
chr6 (402-481)||(8770796-8770875)
chr6 (402-457)||(17798710-17798765)
chr6 (70-145)||(21606151-21606226)
chr6 (420-458)||(14392874-14392912)
chr6 (402-455)||(2854923-2854976)
chr6 (402-454)||(11653141-11653193)
chr6 (46-94)||(13086162-13086210)
[»] chr5 (10 HSPs)
chr5 (6-125)||(41914330-41914450)
chr5 (378-455)||(20252318-20252395)
chr5 (402-481)||(29812885-29812964)
chr5 (7-125)||(34423342-34423461)
chr5 (406-454)||(10460416-10460464)
chr5 (43-101)||(43401080-43401138)
chr5 (61-122)||(23256031-23256092)
chr5 (6-145)||(6023419-6023559)
chr5 (47-131)||(21270993-21271077)
chr5 (429-481)||(35076888-35076940)
[»] scaffold0094 (1 HSPs)
scaffold0094 (38-145)||(23150-23257)
[»] chr4 (14 HSPs)
chr4 (46-131)||(14547422-14547507)
chr4 (25-125)||(39983670-39983770)
chr4 (402-458)||(12377491-12377547)
chr4 (6-125)||(32227651-32227771)
chr4 (46-94)||(42952974-42953022)
chr4 (6-81)||(3694085-3694160)
chr4 (17-143)||(19498721-19498848)
chr4 (25-100)||(46218292-46218367)
chr4 (402-457)||(50609474-50609529)
chr4 (420-481)||(12832928-12832989)
chr4 (38-83)||(42252913-42252958)
chr4 (408-457)||(49194242-49194291)
chr4 (46-122)||(17188447-17188523)
chr4 (429-481)||(46218711-46218763)
[»] scaffold0533 (1 HSPs)
scaffold0533 (56-147)||(514-605)


Alignment Details
Target: scaffold0036 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 6 - 481
Target Start/End: Original strand, 3007 - 3498
Alignment:
Q  6 caaaggaggacggagggttgggg-ttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggct 104  Q
    ||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  3007 caaaggaggacggagggttgggggttaggcagttgagagcttttaatttttctttattaggtaaatggtgttggaggatggtggttgataaggaggggct 3106  T
Q  105 ctggtatcgagtgttaaaagcaagatacggagaggagggggcgt------------gggaggcactgttctttatggtggaggacgttgtgtaatgtccg 192  Q
    ||| |||||||||||||||| ||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||| |    
T  3107 ctgttatcgagtgttaaaagaaagatacggagaggagggggcggttgaaggagggagggaggcactgttctttatggtggaggacgttgtgtaatgtctg 3206  T
Q  193 tggggg--atatgtgagggtgtgaggagttggtttgacgaaaatttacattgtgatgtgggggacggatgcaacactttattctggcacgatacttagtt 290  Q
    ||||||  ||| ||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  3207 tgggggggatacgtgagggtgcggggagttggtttgacgaaaatttatattgtgatgtgggggacggatgcaacactttattctagcacgatacttggtt 3306  T
Q  291 aggggggattccattacgtatcaaatctccccgactctttgatttggctgtgaataaggagt-ttcggtggcgggaatggcgaggttagggtgggatgaa 389  Q
    |||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||    
T  3307 agggggaattccattacgtatcaaatttccccgactctatgatttggctgtgaataaggagtgttcggtggcggaaatggcgagcttagggtgggatgaa 3406  T
Q  390 ggaggctcagcttgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttctactttattatctaacattgtttt 481  Q
    |||||||| |||||||| |||||||||| ||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  3407 ggaggctcggcttgggtctggagacggcatttattagcatgggaggaggatagtgtgagggagtgttctgctttattatctaacattgtttt 3498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 35273797 - 35273659
Alignment:
Q  8 aaggaggacggagggttgggg-ttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctct 106  Q
    ||||| || |||||||||||| |||| ||||||||||  |||||||||||| ||||||| || |||||| ||| |||| ||||||||||||||||| | |    
T  35273797 aaggaagatggagggttgggggttagacggttgggagagtttaatttttctctgttagggaagtggtgttggaagatgttggttgataaggaggggttgt 35273698  T
Q  107 ggtatcgagtgttaaaagcaagatacggagaggaggggg 145  Q
    |||| || || ||||||||| | ||||| ||||| ||||    
T  35273697 ggtaccgtgtattaaaagcacgttacggggaggaagggg 35273659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 20115544 - 20115460
Alignment:
Q  61 ttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgagtgttaaaagcaagatacggagaggaggggg 145  Q
    ||||| ||||||||| |||||||| ||||||| ||||| ||| | |||||||||||||||||||| |||||||| ||||||||||    
T  20115544 ttagggaaatggtgttggaggatgttggttgagaaggaagggttgtggtatcgagtgttaaaagctagatacggcgaggaggggg 20115460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 481
Target Start/End: Original strand, 16985944 - 16986070
Alignment:
Q  355 cggtggcgggaatggcgaggttagggtgggatgaaggaggctcagcttgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtg 454  Q
    ||||||||| ||||||||  ||||| ||||| | ||||||   |||||||||||||||| | ||  | ||||| |||||||||||  | ||||||||||     
T  16985944 cggtggcggaaatggcgaccttaggttgggaggtaggaggaggagcttgggtgtggagaagacgccttttagcgtgggaggaggaagaggtgagggagtt 16986043  T
Q  455 ttctactttattatctaacattgtttt 481  Q
    |||| ||||||||||||||||||||||    
T  16986044 ttctgctttattatctaacattgtttt 16986070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 481
Target Start/End: Original strand, 53505069 - 53505148
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttctactttattatctaacattgtttt 481  Q
    |||||||||||||| || ||||||||||||||||| || | |||||||||||||| | |||| |||  ||||||||||||    
T  53505069 tgggtgtggagacgacgattgttagcatgggaggaagagagtgtgagggagtgttgtgctttgttacttaacattgtttt 53505148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 1231652 - 1231790
Alignment:
Q  6 caaaggaggacggagggttgggg-ttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggct 104  Q
    |||||||||| || ||||||||| ||||| ||||  |||  ||||||||||||||||| || ||||||||| |||||||| |||| || || |||||| |    
T  1231652 caaaggaggatggggggttgggggttaggaggttaagagagtttaatttttctttgttggggaaatggtgttggaggatgttggtggaaaaagaggggtt 1231751  T
Q  105 ctggtatcgagtgttaaaagcaagatacggagaggaggg 143  Q
     ||||| || || ||||| ||| | ||| ||||||||||    
T  1231752 gtggtaccgtgttttaaaggcacgttacagagaggaggg 1231790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 1646130 - 1646066
Alignment:
Q  164 ttatggtggaggacgttgtgtaatgtccgtggggga-tatgtgagggtgtgaggagttggtttga 227  Q
    ||||||||||||| ||||||||| |||||||||||| || ||||||| ||||||| |||||||||    
T  1646130 ttatggtggaggatgttgtgtaaggtccgtgggggagtaggtgagggagtgaggaattggtttga 1646066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 15244200 - 15244323
Alignment:
Q  23 ttggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgagtgttaaa 122  Q
    ||||||||||| || |||||| |||||||  |||||| ||||| || |||||| |||||||| || |||| |||| |||| | |||||||| || || ||    
T  15244200 ttggggttaggtgggtgggagattttaatacttcttttttagggaagtggtgttggaggatgttgattgacaagg-ggggttgtggtatcgtgtcttgaa 15244298  T
Q  123 agcaagatacggagaggagggggcg 147  Q
    |||  |||||||||||| |||||||    
T  15244299 agcgcgatacggagaggtgggggcg 15244323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 481
Target Start/End: Original strand, 21736862 - 21736941
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttctactttattatctaacattgtttt 481  Q
    ||||||||||| || || ||||| || ||||||||||| | ||||||||||||||||||  | |||| ||||||||||||    
T  21736862 tgggtgtggaggcgccggttgtttgcttgggaggaggagagtgtgagggagtgttctaccctgttatgtaacattgtttt 21736941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 43182730 - 43182779
Alignment:
Q  408 tggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttc 457  Q
    |||||||| ||||||||||| ||||||||||| ||| |||||||||||||    
T  43182730 tggagacgccgtttgttagcctgggaggaggaaaatatgagggagtgttc 43182779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 10868274 - 10868226
Alignment:
Q  46 tttaatttttctttgttaggtaaatggtgtaggaggatggtggttgata 94  Q
    ||||||||| |||||||||||||||||||| |||||||| |||| ||||    
T  10868274 tttaattttgctttgttaggtaaatggtgttggaggatgttggtagata 10868226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 21735221 - 21735321
Alignment:
Q  25 ggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgagtgttaaaag 124  Q
    ||||||||  || |||||||||||||||| |||||||| || || |||||| |||| ||| |||| || || |||||| | ||||| || ||||||||||    
T  21735221 ggggttagaagggtgggagcttttaatttatctttgttgggaaagtggtgttggagaatgttggtggagaaagaggggttatggtaccgggtgttaaaag 21735320  T
Q  125 c 125  Q
    |    
T  21735321 c 21735321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 21739992 - 21740040
Alignment:
Q  46 tttaatttttctttgttaggtaaatggtgtaggaggatggtggttgata 94  Q
    ||||||||| |||||||||||||||||||| |||||||| |||| ||||    
T  21739992 tttaattttgctttgttaggtaaatggtgttggaggatgttggtagata 21740040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 458
Target Start/End: Original strand, 42830578 - 42830634
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttct 458  Q
    |||||||||||||| || |||||||| ||||||||||||| |||  |||||||||||    
T  42830578 tgggtgtggagacgccgattgttagcttgggaggaggatagtgttcgggagtgttct 42830634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 53504676 - 53504732
Alignment:
Q  25 ggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggagg 81  Q
    ||||| |||||| |||| ||||||||| ||||||||||||| ||||||||| |||||    
T  53504676 ggggtcaggcgggtgggtgcttttaatatttctttgttagggaaatggtgttggagg 53504732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 457
Target Start/End: Original strand, 299345 - 299396
Alignment:
Q  406 tgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttc 457  Q
    |||||||| |||| |||||||| ||||||||||| | |||||||||||||||    
T  299345 tgtggagatggcggttgttagcttgggaggaggaaagtgtgagggagtgttc 299396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 1646300 - 1646206
Alignment:
Q  8 aaggaggacggagggtt-ggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggg 101  Q
    ||||||||||||||||| |||||  |  |||||||||  ||| |||||||| ||||||| || |||| | |||||||| || |||||||||||||    
T  1646300 aaggaggacggagggttaggggtgcgaaggttgggagagtttgatttttctctgttagggaagtggtattggaggatgttgattgataaggaggg 1646206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 15205181 - 15205301
Alignment:
Q  25 ggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgagtgttaaaag 124  Q
    ||||||||| || |||||| |||||||  |||||| ||||| || |||||| |||||||| || |||| |||| |||| | |||||||| || || ||||    
T  15205181 ggggttaggagggtgggagattttaatacttctttattagg-aagtggtgttggaggatgttgattgacaagg-ggggttgtggtatcgtgtcttgaaag 15205278  T
Q  125 caagatacggagaggagggggcg 147  Q
    |  |||||||||||| |||||||    
T  15205279 cgcgatacggagaggtgggggcg 15205301  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 16176204 - 16176298
Alignment:
Q  6 caaaggaggacggagggttggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggagg 100  Q
    |||||||||| ||||||||||| |  || |||| |||||||||||||| ||| ||||  | || | |||| |||||||| |||| ||||||||||    
T  16176204 caaaggaggatggagggttgggctgcggaggttaggagcttttaatttatctctgttgagaaagtagtgttggaggatgttggtagataaggagg 16176298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 36731598 - 36731528
Alignment:
Q  28 gttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataagga 98  Q
    |||||| || |||| ||||||||| |  |||||||||| || |||||| |||||||| |||||||||||||    
T  36731598 gttaggagggtgggtgcttttaatgtagctttgttaggaaagtggtgttggaggatgttggttgataagga 36731528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 456
Target Start/End: Original strand, 39051555 - 39051609
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgtt 456  Q
    ||||||||||||||  | ||||||||||||||||| || | ||||||||||||||    
T  39051555 tgggtgtggagacgatggttgttagcatgggaggaagagagtgtgagggagtgtt 39051609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 455
Target Start/End: Original strand, 12214731 - 12214784
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgt 455  Q
    ||||| ||||||||||| |||||||| ||||||||||| | | |||||||||||    
T  12214731 tgggtttggagacggcggttgttagcttgggaggaggagagtatgagggagtgt 12214784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 14863934 - 14863983
Alignment:
Q  46 tttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataa 95  Q
    ||||||||| | |||||||||||||||||| |||||||| |||| |||||    
T  14863934 tttaattttgcattgttaggtaaatggtgttggaggatgttggtcgataa 14863983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 455
Target Start/End: Complemental strand, 35273401 - 35273348
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgt 455  Q
    |||||||||||||| || |||||||| ||||||||||| |  ||||||||||||    
T  35273401 tgggtgtggagacgtcggttgttagcttgggaggaggaaagcgtgagggagtgt 35273348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 1842125 - 1842217
Alignment:
Q  7 aaaggaggacggagggttggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggag 99  Q
    ||||||||| ||||||||||||||||| |  |||||||||||||||| |||||||| || || |||||| |||||||| |||| |||||||||    
T  1842125 aaaggaggaaggagggttggggttaggagagtgggagcttttaatttatctttgttgggaaagtggtgttggaggatgttggtggataaggag 1842217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 125
Target Start/End: Original strand, 26245980 - 26246099
Alignment:
Q  6 caaaggaggacggagggttggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctc 105  Q
    |||||||||  ||||||||||||| ||| || |||||||||||||||| || || ||||| || |||||| |||||||| |||| |||||||||||  |     
T  26245980 caaaggaggttggagggttggggtgaggaggatgggagcttttaatttatcattattaggaaagtggtgttggaggatgttggtggataaggagggatta 26246079  T
Q  106 tggtatcgagtgttaaaagc 125  Q
    |||||| |||| ||||||||    
T  26246080 tggtatagagttttaaaagc 26246099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 32488444 - 32488333
Alignment:
Q  6 caaaggaggacggagggttgggg-ttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggct 104  Q
    |||||||||| |||||||||||| ||||| |  |||||||||||||||| |||||||| || ||  ||||| |||||||| || ||||||||||||||||    
T  32488444 caaaggaggatggagggttgggggttaggagagtgggagcttttaatttatctttgttggggaagcggtgttggaggatgatgattgataaggaggggct 32488345  T
Q  105 ctggtatcgagt 116  Q
     ||||| |||||    
T  32488344 atggtaccgagt 32488333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 478
Target Start/End: Complemental strand, 20213893 - 20213786
Alignment:
Q  370 cgaggttagggtgggatgaaggaggctcagcttgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttctactttattatc 469  Q
    |||||||||||||||| || ||||| || || |||||||||||||| | ||||||||| ||||||||||| | | |||||||||||||| |||| |||      
T  20213893 cgaggttagggtgggagga-ggagggtcggcgtgggtgtggagacgccatttgttagcttgggaggaggagagtctgagggagtgttctgctttgttaca 20213795  T
Q  470 taacattgt 478  Q
    |||||||||    
T  20213794 taacattgt 20213786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 42183233 - 42183309
Alignment:
Q  46 tttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgagtgttaaa 122  Q
    |||||||| ||||||||||| || |||||| ||||| || ||||||||||||| ||| | |||||||||||||||||    
T  42183233 tttaatttatctttgttaggaaagtggtgttggaggttgttggttgataaggatgggttatggtatcgagtgttaaa 42183309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 45717864 - 45717744
Alignment:
Q  6 caaaggaggacggagggttggggtt-aggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggct 104  Q
    |||||||||  |||||||||||| | ||| || |||||||||||||||| || || ||||| || |||||| |||||||| |||| |||||||||||  |    
T  45717864 caaaggaggttggagggttgggggtgaggaggatgggagcttttaatttatcattattaggaaagtggtgttggaggatgttggtggataaggagggatt 45717765  T
Q  105 ctggtatcgagtgttaaaagc 125  Q
     |||||| |||| ||||||||    
T  45717764 atggtatagagttttaaaagc 45717744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 481
Target Start/End: Original strand, 44602663 - 44602742
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttctactttattatctaacattgtttt 481  Q
    |||||||||||  | ||||||||||| |||||||| || | ||| ||||||||||||| |||||||| ||||||||||||    
T  44602663 tgggtgtggaggtgtcgtttgttagcgtgggaggaagagagtgttagggagtgttctattttattatataacattgtttt 44602742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 22864004 - 22863912
Alignment:
Q  25 ggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgagtg 117  Q
    |||||| || |||| ||||  |||||||| ||||||||||| || |||||| |||||||| ||| ||||||||||||| | ||||| ||||||    
T  22864004 ggggtttggaggttaggagaatttaatttatctttgttagggaagtggtgttggaggatgttgggtgataaggaggggttgtggtaccgagtg 22863912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 481
Target Start/End: Complemental strand, 32488119 - 32487955
Alignment:
Q  318 tccccgactctttgatttggctgtgaataaggagttt-cggtggcgggaatggcgaggttagggtgggatgaaggaggctcagcttgggtgtggagacgg 416  Q
    ||||| |||||| |||||||||||||||||||||| | |||||| ||  ||   ||||||||||||||| || || ||    || ||||||||| |  |     
T  32488119 tccccaactcttcgatttggctgtgaataaggagtgtacggtggaggagataaggaggttagggtgggacgatgggggaagggcgtgggtgtggcgctgc 32488020  T
Q  417 cgtttgttagcatgggaggaggataatgtgagggagtgttctactttattatctaacattgtttt 481  Q
    || |||||||||||||||||||| | |||||||||||| |||  |||||||  |||| |||||||    
T  32488019 cgcttgttagcatgggaggaggagagtgtgagggagtgctctgttttattacataacgttgtttt 32487955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 40903600 - 40903696
Alignment:
Q  6 caaaggaggacggagggttg-gggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggg 101  Q
    |||||||||| |||||| || |||||| |  | |||| ||||| ||||| || ||||| |||||||||||| |||||||| ||||||||||||||||    
T  40903600 caaaggaggaaggagggctgagggttaagaaggtgggggctttcaatttatcgttgttgggtaaatggtgttggaggatgctggttgataaggaggg 40903696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 454
Target Start/End: Original strand, 26246317 - 26246444
Alignment:
Q  328 tttgatttggctgtgaataaggagt-ttcggtggcgggaatggcgaggttagggtgggatgaaggaggctcagcttgggtgtggagacggcgtttgttag 426  Q
    |||||| |||||||||||||||||| |||||||| ||  |||| ||  ||||||||||  ||||| ||    |||||||||||||||||| |  ||||||    
T  26246317 tttgatctggctgtgaataaggagtgttcggtgggggagatggtgactttagggtgggcggaaggtgggagggcttgggtgtggagacgggggctgttag 26246416  T
Q  427 catgggaggaggataatgtgagggagtg 454  Q
    | ||||||||||| | ||| ||||||||    
T  26246417 cgtgggaggaggacagtgttagggagtg 26246444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 33411534 - 33411640
Alignment:
Q  6 caaaggaggacggagggtt-ggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggct 104  Q
    ||||||||||||||||||| ||||| ||| || |||||||||||||| |  | ||| | || || |||||| |||||||| ||| ||| |||||||||||    
T  33411534 caaaggaggacggagggttgggggtgaggagggtgggagcttttaatatggcgttggtggggaagtggtgttggaggatgttggatgaaaaggaggggct 33411633  T
Q  105 ctggtat 111  Q
     ||||||    
T  33411634 gtggtat 33411640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 18697927 - 18697834
Alignment:
Q  6 caaaggaggacggagggttgggg-ttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataagga 98  Q
    |||||||| | |||||||||||| ||||| || ||||  |||||||| |  |||||||||| || |||||| |||||||| |||||||||||||    
T  18697927 caaaggagaaaggagggttgggggttaggagggtgggttcttttaatgtagctttgttaggaaagtggtgttggaggatgttggttgataagga 18697834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 24220213 - 24220321
Alignment:
Q  6 caaaggaggacggagggttggg-gttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggct 104  Q
    ||||||||||  |||||||||| |||||| || | || || | |||||| || ||||||||||| |||||| |||||||| || |||||| |||||| ||    
T  24220213 caaaggaggatagagggttgggagttaggaggatcggtgcgtataatttatccttgttaggtaagtggtgttggaggatgttgattgatagggagggtct 24220312  T
Q  105 ctggtatcg 113  Q
     ||||||||    
T  24220313 gtggtatcg 24220321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 457
Target Start/End: Original strand, 2467925 - 2467980
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttc 457  Q
    ||||||||| || ||||||||||||| | ||||||||| | |||||||||||||||    
T  2467925 tgggtgtggcgaaggcgtttgttagcttcggaggaggagagtgtgagggagtgttc 2467980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 3251250 - 3251191
Alignment:
Q  86 tggttgataaggaggggctctggtatcgagtgttaaaagcaagatacggagaggaggggg 145  Q
    |||| |||||||||||| | ||||||||||| ||||| || || ||||||||||||||||    
T  3251250 tggtggataaggaggggttatggtatcgagtcttaaaggctaggtacggagaggaggggg 3251191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 455
Target Start/End: Original strand, 4276690 - 4276743
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgt 455  Q
    ||||||||| | || ||| ||||||||||||||||||| | |||||||||||||    
T  4276690 tgggtgtggcgtcgacgtctgttagcatgggaggaggagagtgtgagggagtgt 4276743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 467
Target Start/End: Complemental strand, 5663531 - 5663479
Alignment:
Q  415 ggcgtttgttagcatgggaggaggataatgtgagggagtgttctactttatta 467  Q
    |||| ||||| || ||||||||||| ||||||||||||||||| | |||||||    
T  5663531 ggcgattgttggcctgggaggaggaaaatgtgagggagtgttcaattttatta 5663479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 11233959 - 11234007
Alignment:
Q  46 tttaatttttctttgttaggtaaatggtgtaggaggatggtggttgata 94  Q
    ||||||||| |||||||||||||||||||| ||| |||| |||| ||||    
T  11233959 tttaattttgctttgttaggtaaatggtgttggacgatgttggtagata 11234007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 458
Target Start/End: Complemental strand, 12564847 - 12564791
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttct 458  Q
    ||||||||| |||| || ||| |||||||||||||||| | |||||| |||||||||    
T  12564847 tgggtgtggtgacgacgattgctagcatgggaggaggagagtgtgagagagtgttct 12564791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 45702418 - 45702342
Alignment:
Q  46 tttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgagtgttaaa 122  Q
    |||||||| ||||||||||| || |||||| ||||  || ||||||||||||| ||| | |||||||| || |||||    
T  45702418 tttaatttatctttgttagggaagtggtgttggagactgttggttgataaggaagggttgtggtatcgtgttttaaa 45702342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 13063244 - 13063386
Alignment:
Q  6 caaaggaggacggagggttg-gggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggct 104  Q
    |||||||||| ||||| ||| |||||||| || | ||||  |||||||| || ||||||||||| |||||| |||||||| || ||||||||||||| ||    
T  13063244 caaaggaggatggaggtttgagggttaggagggtaggagtctttaatttatcattgttaggtaagtggtgttggaggatgttgattgataaggagggcct 13063343  T
Q  105 ctggtatcgagtgttaaaagcaagatacggagaggagggggcg 147  Q
     ||||||||||| || |||||  | || || ||||||||||||    
T  13063344 gtggtatcgagtattgaaagcccgttatggtgaggagggggcg 13063386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 39465109 - 39465013
Alignment:
Q  6 caaaggaggacggagggttgggg-ttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggg 101  Q
    |||||||||| |||||||||||| ||||| || | ||||| |||||||| ||||| || ||||| |||||| |||||||| ||||||||||||||||    
T  39465109 caaaggaggaaggagggttgggggttaggagggttggagcatttaatttatctttattgggtaagtggtgttggaggatgttggttgataaggaggg 39465013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 458
Target Start/End: Complemental strand, 7690784 - 7690728
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttct 458  Q
    ||||||||||||||||| |||||||||||||||||||| | |||||| ||| |||||    
T  7690784 tgggtgtggagacggcggttgttagcatgggaggaggagagtgtgagagagcgttct 7690728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 44363226 - 44363086
Alignment:
Q  6 caaaggaggacggagggttgggg-ttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggct 104  Q
    |||||||||| |||||||||||| ||||| || |  | || |||||||| || || |||||||| |||||| |||||||| || |||||| ||||||  |    
T  44363226 caaaggaggatggagggttgggggttaggagggtcagtgcgtttaatttatccttattaggtaagtggtgttggaggatgttgattgatagggagggtat 44363127  T
Q  105 ctggtatcgagtgttaaaagcaagatacggagaggaggggg 145  Q
     ||||||||||| || |||||  |||| || ||||||||||    
T  44363126 gtggtatcgagtattgaaagcccgatatggtgaggaggggg 44363086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 454
Target Start/End: Original strand, 32468835 - 32468962
Alignment:
Q  328 tttgatttggctgtgaataaggagt-ttcggtggcgggaatggcgaggttagggtgggatgaaggaggctcagcttgggtgtggagacggcgtttgttag 426  Q
    |||||| |||| ||||||||||||| ||||| || ||  |||||||  ||||||||||  ||||| ||    |||||||||||||||||| | |||||||    
T  32468835 tttgatctggcagtgaataaggagtgttcggcgggggagatggcgacattagggtgggcggaaggtggaagggcttgggtgtggagacgggggttgttag 32468934  T
Q  427 catgggaggaggataatgtgagggagtg 454  Q
    | ||||||||||| | ||| ||||||||    
T  32468935 cgtgggaggaggacagtgttagggagtg 32468962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 456
Target Start/End: Original strand, 25987654 - 25987708
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgtt 456  Q
    ||||||||| || ||||||||||||| ||||||||||| | ||||||||||||||    
T  25987654 tgggtgtggcgaaggcgtttgttagcttgggaggaggagagtgtgagggagtgtt 25987708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 18145023 - 18144914
Alignment:
Q  17 ggagggttgg-ggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgag 115  Q
    |||||||||| ||||||| || |||||| ||||||||| |||||||| |  || |||||| ||||||||  ||| ||||||||||| || ||||| || |    
T  18145023 ggagggttggtggttaggaggctgggagtttttaatttatctttgttggaaaagtggtgttggaggatgtcggtcgataaggagggcctttggtaccgtg 18144924  T
Q  116 tgttaaaagc 125  Q
    | ||||||||    
T  18144923 ttttaaaagc 18144914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 458
Target Start/End: Original strand, 6800220 - 6800276
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttct 458  Q
    |||||||||||||| |||||||| || |||||||||||  ||||||||||| |||||    
T  6800220 tgggtgtggagacgccgtttgtttgcgtgggaggaggaatatgtgagggagcgttct 6800276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 481
Target Start/End: Complemental strand, 47801351 - 47801272
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttctactttattatctaacattgtttt 481  Q
    |||||||||||||  ||| ||||||| ||||||||||| | ||||||||| || |||| | |||||  ||||||||||||    
T  47801351 tgggtgtggagacaccgtctgttagcttgggaggaggaaagtgtgagggaatgctctattctattacataacattgtttt 47801272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 458
Target Start/End: Original strand, 7634979 - 7635032
Alignment:
Q  405 gtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttct 458  Q
    |||||| ||||||| ||| |||||||||||||||| | |||||| |||||||||    
T  7634979 gtgtggcgacggcgattgctagcatgggaggaggagagtgtgagagagtgttct 7635032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 18133235 - 18133150
Alignment:
Q  17 ggagggttgg-ggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggg 101  Q
    |||||||||| ||||||| || |||||| ||||||||| |||||||| || || ||||||  |||||||  ||| |||||||||||    
T  18133235 ggagggttggtggttaggaggctgggagtttttaatttatctttgttgggaaagtggtgttcgaggatgtcggtcgataaggaggg 18133150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 455
Target Start/End: Original strand, 27293456 - 27293509
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgt 455  Q
    ||||| ||||||||||| |||||||| ||||||||||| | | |||||||||||    
T  27293456 tgggtttggagacggcggttgttagcttgggaggaggagagtatgagggagtgt 27293509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 19735189 - 19735141
Alignment:
Q  46 tttaatttttctttgttaggtaaatggtgtaggaggatggtggttgata 94  Q
    ||||||||| | |||||||||||||||||| |||||||| |||| ||||    
T  19735189 tttaattttgcattgttaggtaaatggtgttggaggatgttggtcgata 19735141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 458
Target Start/End: Complemental strand, 21376321 - 21376289
Alignment:
Q  426 gcatgggaggaggataatgtgagggagtgttct 458  Q
    |||||||||||||| ||||||||||||||||||    
T  21376321 gcatgggaggaggagaatgtgagggagtgttct 21376289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 454
Target Start/End: Original strand, 27000142 - 27000194
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtg 454  Q
    |||||||||||||| || |||||  | ||||||||||||| ||||||||||||    
T  27000142 tgggtgtggagacgtcgcttgttgtcttgggaggaggatagtgtgagggagtg 27000194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 13112716 - 13112854
Alignment:
Q  6 caaaggaggacggagggttgggg-ttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggct 104  Q
    |||||||||| || ||||||||| ||||| ||||  |||  ||||||||||||||||| || ||||||||| |||||||| |||| || || |||||| |    
T  13112716 caaaggaggatggggggttgggggttaggaggttaagagagtttaatttttctttgttggggaaatggtgttggaggatgttggtggacaaagaggggtt 13112815  T
Q  105 ctggtatcgagtgttaaaagcaagatacggagaggaggg 143  Q
     ||||| || || ||||||||| | ||||||||||||||    
T  13112816 gtggtaccgtgttttaaaagcacgttacggagaggaggg 13112854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 19580053 - 19579951
Alignment:
Q  20 gggttggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgagtgtt 119  Q
    ||||||||||||||  | |||||||||||||||| || |||||||| ||||| ||| |||||||| |||| || || || ||| | ||||||| ||||||    
T  19580053 gggttggggttaggaaggtgggagcttttaatttatcattgttaggaaaatgatgttggaggatgttggtggacaaagaagggttgtggtatcaagtgtt 19579954  T
Q  120 aaa 122  Q
    |||    
T  19579953 aaa 19579951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 14976134 - 14976243
Alignment:
Q  17 ggagggttggggtt-aggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgag 115  Q
    |||||||||||| | ||| || |||||||||||||||| || || ||||| || |||||| |||||||| |||| |||||||||||  | |||||| |||    
T  14976134 ggagggttgggggtgaggaggatgggagcttttaatttatcattattaggaaagtggtgttggaggatgttggtggataaggagggattatggtatagag 14976233  T
Q  116 tgttaaaagc 125  Q
    | ||||||||    
T  14976234 ttttaaaagc 14976243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 454
Target Start/End: Original strand, 14976461 - 14976588
Alignment:
Q  328 tttgatttggctgtgaataaggagt-ttcggtggcgggaatggcgaggttagggtgggatgaaggaggctcagcttgggtgtggagacggcgtttgttag 426  Q
    |||||| |||| ||||||||||||| |||||||| ||  |||||||  ||||||||||  ||||| ||    |||||||||||||||||| |  ||||||    
T  14976461 tttgatctggcagtgaataaggagtgttcggtgggggagatggcgacattagggtgggcggaaggtggaagggcttgggtgtggagacgggggctgttag 14976560  T
Q  427 catgggaggaggataatgtgagggagtg 454  Q
    | ||||||||||| | ||| ||||||||    
T  14976561 cgtgggaggaggacagtgttagggagtg 14976588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 481
Target Start/End: Original strand, 4534488 - 4534570
Alignment:
Q  399 gcttgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttctactttattatctaacattgtttt 481  Q
    ||||||||||||||||| || |||||||| ||||||||||| | |||  ||||||| ||||  |||||||||||  |||||||    
T  4534488 gcttgggtgtggagacgccgattgttagcttgggaggaggagagtgttcgggagtgctctatgttattatctaatgttgtttt 4534570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 11649855 - 11649755
Alignment:
Q  25 ggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgagtgttaaaag 124  Q
    ||||||||||||  ||| ||||| ||| || || ||||||| || |||||| |||||||| ||||||||||||| ||  | |||||||| || |||||||    
T  11649855 ggggttaggcggaagggtgctttcaatattgctctgttagggaagtggtgttggaggatgttggttgataaggatggtttgtggtatcgtgtcttaaaag 11649756  T
Q  125 c 125  Q
    |    
T  11649755 c 11649755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 458
Target Start/End: Complemental strand, 14794768 - 14794712
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttct 458  Q
    |||| ||||||||| ||||||||||| |||||||| || | ||||||||||||||||    
T  14794768 tgggagtggagacgtcgtttgttagcttgggaggaagagagtgtgagggagtgttct 14794712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 20796349 - 20796285
Alignment:
Q  25 ggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggt 89  Q
    ||||||||| ||||| | |  ||||||||| |||||||||||||||||||| |||||||| ||||    
T  20796349 ggggttaggaggttgagggagtttaattttgctttgttaggtaaatggtgttggaggatgttggt 20796285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 32303888 - 32303804
Alignment:
Q  6 caaaggaggacggagggttgggg-ttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggt 89  Q
    |||||||||| ||||| |||||| ||||| || | || ||||||||||| ||||| ||||||||||||||  |||||||| ||||    
T  32303888 caaaggaggaaggaggtttgggggttaggaggataggcgcttttaatttatctttattaggtaaatggtgctggaggatgttggt 32303804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 45814584 - 45814532
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtg 454  Q
    |||||||||||||| |||||||| || |||||||||||||  |||||||||||    
T  45814584 tgggtgtggagacgccgtttgtttgcgtgggaggaggatatggtgagggagtg 45814532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 751531 - 751432
Alignment:
Q  6 caaaggaggacggagggtt-ggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggct 104  Q
    ||||||||||||||||||| ||||| ||| || |||||||||||||| |  | ||| | || || |||||  |||||||| ||||||| |||||||||||    
T  751531 caaaggaggacggagggttgggggtgaggagggtgggagcttttaatatggcgttggtggggaagtggtgctggaggatgttggttgaaaaggaggggct 751432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 18591734 - 18591667
Alignment:
Q  46 tttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcg 113  Q
    |||||||||||| ||||||| || |||||| |||||||| | || ||||||||||| || ||||||||    
T  18591734 tttaatttttctctgttagggaagtggtgttggaggatgcttgtagataaggagggcctttggtatcg 18591667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 481
Target Start/End: Complemental strand, 31912417 - 31912334
Alignment:
Q  398 agcttgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttctactttattatctaacattgtttt 481  Q
    |||||||  |||| |||||||||||||||||||||||||||| || ||| |||| |||| |  | | |||||||| ||||||||    
T  31912417 agcttggcagtggcgacggcgtttgttagcatgggaggaggagaaggtgcgggaatgttgtgatattttatctaatattgtttt 31912334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 454
Target Start/End: Original strand, 34504389 - 34504500
Alignment:
Q  344 ataaggagt-ttcggtggcgggaatggcgaggttagggtgggatgaaggaggctcagcttgggtgtggagacggcgtttgttagcatgggaggaggataa 442  Q
    ||||||||| |||||||||||  ||||||||  | |||||||| ||||| ||    |||||||  |||||  |||||||| | ||||||||||||||||     
T  34504389 ataaggagtgttcggtggcggatatggcgagtctggggtgggaagaaggtggtcgcgcttggggctggaggaggcgtttgatggcatgggaggaggatag 34504488  T
Q  443 tgtgagggagtg 454  Q
    ||||||||||||    
T  34504489 tgtgagggagtg 34504500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 16586625 - 16586735
Alignment:
Q  6 caaaggaggacggagggttggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctc 105  Q
    |||||||||| || || |||||||||||||| ||||||  |||||| |||| ||||| |  || |||||| |||||||| || | || ||||||||| |     
T  16586625 caaaggaggatggtggtttggggttaggcgggtgggagactttaatctttcattgttggaaaagtggtgttggaggatgatgatcgacaaggaggggtta 16586724  T
Q  106 tggtatcgagt 116  Q
    ||||| |||||    
T  16586725 tggtaccgagt 16586735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 466
Target Start/End: Original strand, 17404525 - 17404589
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttctactttatt 466  Q
    |||||||||||| | ||| | |||||||||||||| || | |||||||||||||||  |||||||    
T  17404525 tgggtgtggagatgacgtctattagcatgggaggatgagagtgtgagggagtgttccgctttatt 17404589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 25320523 - 25320383
Alignment:
Q  6 caaaggaggacggagggttgggg-ttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggct 104  Q
    |||||||||| || ||||||||| ||||||||||  |||  ||||||||||||||||| || ||||||||| |||||||| |||| || || |||||| |    
T  25320523 caaaggaggatggggggttgggggttaggcggttaagagagtttaatttttctttgttgggaaaatggtgttggaggatgttggtggacaaagaggggtt 25320424  T
Q  105 ctggtatcgagtgttaaaagcaagatacggagaggaggggg 145  Q
     |||||  | || ||||||||| | || |||||||||||||    
T  25320423 gtggtactgtgttttaaaagcacgttatggagaggaggggg 25320383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 43249244 - 43249310
Alignment:
Q  17 ggagggttggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggat 83  Q
    ||||||||||||||||| ||||| |||  ||||||||| |||||||||||||||||||| |||||||    
T  43249244 ggagggttggggttaggaggttgagagagtttaattttgctttgttaggtaaatggtgttggaggat 43249310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 145
Target Start/End: Original strand, 20128845 - 20128985
Alignment:
Q  6 caaaggaggacggagggttgggg-ttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggct 104  Q
    |||||||||| |||||||||||| ||||| || |  | || |||||||| || || |||||||| |||||| |||||||| || |||||| ||||||  |    
T  20128845 caaaggaggatggagggttgggggttaggagggtcagtgcgtttaatttatccttattaggtaagtggtgttggaggatgttgattgatagggagggtat 20128944  T
Q  105 ctggtatcgagtgttaaaagcaagatacggagaggaggggg 145  Q
     ||||||||||| || |||||  |||| || ||||||||||    
T  20128945 gtggtatcgagtattgaaagcccgatatggtgaggaggggg 20128985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 455
Target Start/End: Original strand, 21313010 - 21313063
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgt 455  Q
    ||||| ||||||||||| |||||||||||||||||||| | | |||||||||||    
T  21313010 tgggtttggagacggcggttgttagcatgggaggaggagagtttgagggagtgt 21313063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 442356 - 442432
Alignment:
Q  46 tttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgagtgttaaa 122  Q
    |||||||| |||||| |||| ||||||||  |||||||| | || |||||||||||| | ||||||||||| |||||    
T  442356 tttaatttatctttggtaggaaaatggtgctggaggatgctagtagataaggaggggttatggtatcgagtcttaaa 442432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 3773743 - 3773691
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtg 454  Q
    |||||||||||||| || |||||||| ||||||||||| | ||||||||||||    
T  3773743 tgggtgtggagacgccggttgttagcttgggaggaggaaagtgtgagggagtg 3773691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 13448883 - 13448831
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtg 454  Q
    |||| ||||||||||||||||||||| ||||||||||| | | ||||||||||    
T  13448883 tgggagtggagacggcgtttgttagcctgggaggaggagagtttgagggagtg 13448831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 24794417 - 24794369
Alignment:
Q  46 tttaatttttctttgttaggtaaatggtgtaggaggatggtggttgata 94  Q
    ||||||||| |||||||||||||||||||| |||||||| |||| ||||    
T  24794417 tttaattttgctttgttaggtaaatggtgttggaggatgttggtagata 24794369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 481
Target Start/End: Complemental strand, 38921739 - 38921679
Alignment:
Q  421 tgttagcatgggaggaggataatgtgagggagtgttctactttattatctaacattgtttt 481  Q
    |||| |||||||||||||| | |||||||||||| ||| |||| |||| ||||||||||||    
T  38921739 tgtttgcatgggaggaggagagtgtgagggagtgctctgcttttttatgtaacattgtttt 38921679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 25109111 - 25109206
Alignment:
Q  6 caaaggaggacggagggttgggg-ttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggagg 100  Q
    |||||||||| |||||||||||| ||||| || |||| || |||||||| |||||  | |||||||||||  |||||||| |||| || |||||||    
T  25109111 caaaggaggaaggagggttgggggttaggtgggtgggtgcctttaatttatctttaatgggtaaatggtggcggaggatgttggtggaaaaggagg 25109206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 455
Target Start/End: Complemental strand, 23447667 - 23447614
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgt 455  Q
    ||||||||| | || ||| ||||||||||||||||||| | |||||||||||||    
T  23447667 tgggtgtggcgtcgacgtctgttagcatgggaggaggagagtgtgagggagtgt 23447614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 13214812 - 13214905
Alignment:
Q  6 caaaggaggacggagggttgg-ggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataagga 98  Q
    |||||||||| ||| |||||| ||||||| || | || ||||||||||| |||||||| |||||||||||| |||||||| || ||||||||||    
T  13214812 caaaggaggaaggatggttggaggttaggagggttggtgcttttaatttatctttgttgggtaaatggtgttggaggatgttgattgataagga 13214905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 31292494 - 31292610
Alignment:
Q  10 ggaggacggagggttgggg-ttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctgg 108  Q
    |||||| |||||||||||| ||| | |||||||||  |||||  |||||||||| || ||||||||| |||||||| | || |||| ||||||| | |||    
T  31292494 ggaggatggagggttgggggttaagaggttgggagaatttaacatttctttgttggg-aaatggtgttggaggatgttagtagatatggaggggttgtgg 31292592  T
Q  109 tatcgagtgttaaaagca 126  Q
    ||||| ||||||||||||    
T  31292593 tatcgtgtgttaaaagca 31292610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 2821950 - 2821842
Alignment:
Q  8 aaggaggacggagggttggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctg 107  Q
    |||||||| ||||||||| |||||||||  |||||||||||||| ||  ||||||||  || |||||| |||||||| ||   |||||||||||  | ||    
T  2821950 aaggaggatggagggttgaggttaggcgagtgggagcttttaatcttgttttgttagacaagtggtgttggaggatgttgaacgataaggagggattgtg 2821851  T
Q  108 gtatcgagt 116  Q
    |||||||||    
T  2821850 gtatcgagt 2821842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 481
Target Start/End: Original strand, 1727744 - 1727823
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttctactttattatctaacattgtttt 481  Q
    ||||||||||||||  | |||||||||||||||||||| | |||||||||||| || || ||||||  |||| |||||||    
T  1727744 tgggtgtggagacgtaggttgttagcatgggaggaggaaagtgtgagggagtgctcaacattattacataacgttgtttt 1727823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 408 - 455
Target Start/End: Original strand, 29359650 - 29359697
Alignment:
Q  408 tggagacggcgtttgttagcatgggaggaggataatgtgagggagtgt 455  Q
    ||||| ||||||||||| |||||||||||||||| |||||||||||||    
T  29359650 tggaggcggcgtttgttggcatgggaggaggatagtgtgagggagtgt 29359697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 13413362 - 13413312
Alignment:
Q  404 ggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtg 454  Q
    |||||||||||| |||||| |||||||||||||||| | ||||||||||||    
T  13413362 ggtgtggagacgtcgtttgctagcatgggaggaggagagtgtgagggagtg 13413312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 481
Target Start/End: Original strand, 8770796 - 8770875
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttctactttattatctaacattgtttt 481  Q
    |||| ||||||||| || |||||||| ||||||||||| | |||||||||||| || | | |||||  ||||||||||||    
T  8770796 tgggagtggagacgtcgcttgttagcctgggaggaggagagtgtgagggagtgctccaatgtattacataacattgtttt 8770875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 457
Target Start/End: Complemental strand, 17798765 - 17798710
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttc 457  Q
    ||||||||| || |||||||||| || ||||||||||| | |||||||||||||||    
T  17798765 tgggtgtggcgaaggcgtttgttggcttgggaggaggagagtgtgagggagtgttc 17798710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 21606226 - 21606151
Alignment:
Q  70 tggtgtaggaggatggtggttgataaggaggggctctggtatcgagtgttaaaagcaagatacggagaggaggggg 145  Q
    |||||| |||||||| || |||||||||||||| | ||||||||||| || ||| | ||||||| |||||| ||||    
T  21606226 tggtgttggaggatgttgattgataaggaggggttgtggtatcgagttttgaaatcgagatacgaagaggaagggg 21606151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 458
Target Start/End: Complemental strand, 14392912 - 14392874
Alignment:
Q  420 ttgttagcatgggaggaggataatgtgagggagtgttct 458  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  14392912 ttgttagcatgggaggaggagagtgtgagggagtgttct 14392874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 455
Target Start/End: Complemental strand, 2854976 - 2854923
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgt 455  Q
    ||||| ||||||||||| |||||||| ||||||||||| | | |||||||||||    
T  2854976 tgggtttggagacggcggttgttagcttgggaggaggagagtatgagggagtgt 2854923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 11653193 - 11653141
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtg 454  Q
    ||||||||||||||  | |||||||| ||||||||||| | ||||||||||||    
T  11653193 tgggtgtggagacgctgcttgttagcctgggaggaggagagtgtgagggagtg 11653141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 13086210 - 13086162
Alignment:
Q  46 tttaatttttctttgttaggtaaatggtgtaggaggatggtggttgata 94  Q
    |||||| || |||||||||||||||||||| |||||||| |||| ||||    
T  13086210 tttaatgttgctttgttaggtaaatggtgttggaggatgttggtagata 13086162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 41914450 - 41914330
Alignment:
Q  6 caaaggaggacggagggttgggg-ttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggct 104  Q
    |||||||||| ||||| |||||| ||| | ||||||| ||||||||||| |||||  | |||||||||||| |||||||| ||||||| || |||||  |    
T  41914450 caaaggaggaaggaggattgggggttaagaggttgggtgcttttaatttatctttaatgggtaaatggtgttggaggatgatggttgacaaagagggatt 41914351  T
Q  105 ctggtatcgagtgttaaaagc 125  Q
     ||||| ||||| ||||||||    
T  41914350 gtggtaccgagttttaaaagc 41914330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 455
Target Start/End: Complemental strand, 20252395 - 20252318
Alignment:
Q  378 gggtgggatgaaggaggctcagcttgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgt 455  Q
    |||||||| ||||||||||  |  ||||| ||||| || ||||||||||||||||||||||| | |||||||||||||    
T  20252395 gggtgggaggaaggaggctttgggtgggtttggaggcgtcgtttgttagcatgggaggaggagagtgtgagggagtgt 20252318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 481
Target Start/End: Original strand, 29812885 - 29812964
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttctactttattatctaacattgtttt 481  Q
    ||||| |||||||| ||| ||||||||||||||||||| | |||||||||||||| || | | |||  ||||||||||||    
T  29812885 tgggtatggagacgccgtctgttagcatgggaggaggagagtgtgagggagtgttatattcttttaaataacattgtttt 29812964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 34423342 - 34423461
Alignment:
Q  7 aaaggaggacggagggttggggtt-aggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctc 105  Q
    ||||||||| | |||||||||| | ||| || |||||||||||||||| |||||| | |  || |||||| |||||||| |||| || ||||||||| |     
T  34423342 aaaggaggatgaagggttgggggtgaggagggtgggagcttttaatttatctttgatggaaaagtggtgttggaggatgttggtggagaaggaggggttg 34423441  T
Q  106 tggtatcgagtgttaaaagc 125  Q
    || |||||||| ||||||||    
T  34423442 tgatatcgagttttaaaagc 34423461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 454
Target Start/End: Complemental strand, 10460464 - 10460416
Alignment:
Q  406 tgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtg 454  Q
    |||||||||| ||||||||||||||||||||||| | |||| |||||||    
T  10460464 tgtggagacgtcgtttgttagcatgggaggaggagagtgtgcgggagtg 10460416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 43401138 - 43401080
Alignment:
Q  43 gcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggg 101  Q
    ||||||||||| || || || |||||||||||| |||||||| ||||||| ||||||||    
T  43401138 gcttttaatttatccttattgggtaaatggtgttggaggatgctggttgacaaggaggg 43401080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 23256031 - 23256092
Alignment:
Q  61 ttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgagtgttaaa 122  Q
    ||||||||||||||| ||||| || |||||||||| |||||| | |||||| | ||||||||    
T  23256031 ttaggtaaatggtgttggaggttgttggttgataaagaggggttatggtatagggtgttaaa 23256092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 6023559 - 6023419
Alignment:
Q  6 caaaggaggacggagggttg-gggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggct 104  Q
    |||||||||| ||||||||| |||||| | || |||| || |||||||| |||||  | |||||||||||  |||||||| | ||||| || |||||  |    
T  6023559 caaaggaggaaggagggttgagggttaagaggatgggtgcctttaatttatctttaatgggtaaatggtgctggaggatgatagttgacaaagagggttt 6023460  T
Q  105 ctggtatcgagtgttaaaagcaagatacggagaggaggggg 145  Q
     ||||| || || || |||||  | ||||||||||||||||    
T  6023459 gtggtaccgtgttttgaaagctcggtacggagaggaggggg 6023419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 21271077 - 21270993
Alignment:
Q  47 ttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgagtgttaaaagcaagata 131  Q
    ||||||| ||||||||| | || |||||| ||||| || |||||||||||||| || | || ||||| |||||||| ||| ||||    
T  21271077 ttaatttatctttgttaagaaagtggtgttggaggttgttggttgataaggagaggttgtgctatcgtgtgttaaaggcacgata 21270993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 35076888 - 35076940
Alignment:
Q  429 tgggaggaggataatgtgagggagtgttctactttattatctaacattgtttt 481  Q
    ||||||||||| | |||||||||||||||||  ||||||  ||||||||||||    
T  35076888 tgggaggaggagagtgtgagggagtgttctatgttattacgtaacattgtttt 35076940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 23150 - 23257
Alignment:
Q  38 tgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgagtgttaaaagcaagatacggaga 137  Q
    |||||||||||||||| || |||||||| ||||||||| || |  |  |||| ||||| |||||| | ||| ||||||||||||||||  ||||||| ||    
T  23150 tgggagcttttaatttatcgttgttaggaaaatggtgttggcgtcttttggtggataaagaggggttgtggcatcgagtgttaaaagctcgatacggtga 23249  T
Q  138 ggaggggg 145  Q
    ||||||||    
T  23250 ggaggggg 23257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 14547507 - 14547422
Alignment:
Q  46 tttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgagtgttaaaagcaagata 131  Q
    |||||||| |||||| |||||||||||||  ||||| |  || |||||||||||||||| |||||||| |||||||| ||| ||||    
T  14547507 tttaatttatctttgctaggtaaatggtggtggaggttcttgattgataaggaggggctatggtatcgtgtgttaaaggcacgata 14547422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 39983670 - 39983770
Alignment:
Q  25 ggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgagtgttaaaag 124  Q
    ||||||||| || || |||||||||||||  | |||||||| ||||||||| ||| |||| | ||  |||| |||||| | |||||||||||||||||||    
T  39983670 ggggttaggagggtgagagcttttaatttggcattgttaggaaaatggtgttggacgatgttagtgaataaagaggggttgtggtatcgagtgttaaaag 39983769  T
Q  125 c 125  Q
    |    
T  39983770 c 39983770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 458
Target Start/End: Complemental strand, 12377547 - 12377491
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttct 458  Q
    |||||||||||||| |||||||| || |||||||||||   ||||||||||||||||    
T  12377547 tgggtgtggagacgccgtttgtttgcgtgggaggaggaatctgtgagggagtgttct 12377491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 32227771 - 32227651
Alignment:
Q  6 caaaggaggacggagggttgggg-ttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggct 104  Q
    ||||| |||| |||||||||||| ||| | ||||||| ||||||||||| |||||  | | |||||||||| |||||||| ||||| | || |||||  |    
T  32227771 caaagtaggaaggagggttgggggttaagaggttgggtgcttttaatttatctttaatggataaatggtgttggaggatgatggttaacaaagagggatt 32227672  T
Q  105 ctggtatcgagtgttaaaagc 125  Q
     ||||| ||||| ||||||||    
T  32227671 gtggtaccgagttttaaaagc 32227651  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 42952974 - 42953022
Alignment:
Q  46 tttaatttttctttgttaggtaaatggtgtaggaggatggtggttgata 94  Q
    ||||||||| |||||||||||||||||||| |||||||| |||| ||||    
T  42952974 tttaattttgctttgttaggtaaatggtgttggaggatgttggtagata 42953022  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 3694160 - 3694085
Alignment:
Q  6 caaaggaggacggagggttggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggagg 81  Q
    |||||||||| ||||| | ||||||||| || |  |||||||||||||||||||||| || || |||||| |||||    
T  3694160 caaaggaggatggaggttgggggttaggaggatcagagcttttaatttttctttgtttggaaagtggtgttggagg 3694085  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 19498848 - 19498721
Alignment:
Q  17 ggagggttgggg-ttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgag 115  Q
    |||||||||||| |||||||| |||| ||||| ||| |  || ||||||| || |||||| |||||||| ||||||||||||| || || |||||  |||    
T  19498848 ggagggttgggggttaggcgggtgggtgctttaaatatcgctctgttagggaagtggtgttggaggatgttggttgataaggatggtctgtggtactgag 19498749  T
Q  116 tgttaaaagcaagatacggagaggaggg 143  Q
    | || |||||  | ||||| ||||||||    
T  19498748 tcttgaaagctcggtacggggaggaggg 19498721  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 46218292 - 46218367
Alignment:
Q  25 ggggttaggcggttgggagcttttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggagg 100  Q
    ||||||||| || | || || |||||||| |||||||| ||||| |||||| ||||| || |||||||||||||||    
T  46218292 ggggttaggagggtaggtgcctttaatttatctttgttgggtaagtggtgttggaggttgttggttgataaggagg 46218367  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 457
Target Start/End: Complemental strand, 50609529 - 50609474
Alignment:
Q  402 tgggtgtggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttc 457  Q
    ||||||||| |||| |||||||| || ||||||||||| | |||||||||||||||    
T  50609529 tgggtgtggcgacgacgtttgttggcctgggaggaggaaagtgtgagggagtgttc 50609474  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 481
Target Start/End: Original strand, 12832928 - 12832989
Alignment:
Q  420 ttgttagcatgggaggaggataatgtgagggagtgttctactttattatctaacattgtttt 481  Q
    ||||| || ||||||||||| | ||||||||||||| | |||||||||  ||||||||||||    
T  12832928 ttgttggcgtgggaggaggagagtgtgagggagtgtgcaactttattagataacattgtttt 12832989  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 42252958 - 42252913
Alignment:
Q  38 tgggagcttttaatttttctttgttaggtaaatggtgtaggaggat 83  Q
    |||||||||||||| | || |||||||||||||||||| |||||||    
T  42252958 tgggagcttttaatatgtcattgttaggtaaatggtgttggaggat 42252913  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 49194291 - 49194242
Alignment:
Q  408 tggagacggcgtttgttagcatgggaggaggataatgtgagggagtgttc 457  Q
    |||||||| |||||| ||| |||||||||||| | |||||||||||||||    
T  49194291 tggagacgtcgtttgctagtatgggaggaggagagtgtgagggagtgttc 49194242  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 17188523 - 17188447
Alignment:
Q  46 tttaatttttctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgagtgttaaa 122  Q
    |||||||| ||||| ||||| || |||||| ||||| || ||||||||||||| ||| | |||||||| || |||||    
T  17188523 tttaatttatctttattagggaagtggtgttggaggttgttggttgataaggaagggttgtggtatcgtgttttaaa 17188447  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 46218711 - 46218763
Alignment:
Q  429 tgggaggaggataatgtgagggagtgttctactttattatctaacattgtttt 481  Q
    ||||||||||| ||||||||||||||||||   ||||||  ||||||||||||    
T  46218711 tgggaggaggagaatgtgagggagtgttctgtgttattacataacattgtttt 46218763  T

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Target: scaffold0533 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 605 - 514
Alignment:
Q  56 ctttgttaggtaaatggtgtaggaggatggtggttgataaggaggggctctggtatcgagtgttaaaagcaagatacggagaggagggggcg 147  Q
    ||||||| || || |||||| || | ||| ||||||||||||||||  | ||||||||||| ||||| || || ||||||||||||||||||    
T  605 ctttgttggggaagtggtgttggcgtatgttggttgataaggagggtttatggtatcgagtcttaaaggctaggtacggagaggagggggcg 514  T

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