View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5717_high_21 (Length: 494)

Name: NF5717_high_21
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5717_high_21
NF5717_high_21
[»] chr7 (10 HSPs)
chr7 (18-476)||(33416674-33417133)
chr7 (330-476)||(33424745-33424891)
chr7 (350-476)||(33410830-33410956)
chr7 (81-198)||(33411108-33411224)
chr7 (81-171)||(33425054-33425145)
chr7 (217-286)||(33427441-33427508)
chr7 (417-476)||(33436844-33436903)
chr7 (349-457)||(33427563-33427669)
chr7 (26-58)||(33425227-33425259)
chr7 (26-58)||(33411493-33411525)
[»] chr1 (2 HSPs)
chr1 (367-475)||(24984670-24984775)
chr1 (367-475)||(24990500-24990605)


Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 476
Target Start/End: Complemental strand, 33417133 - 33416674
Alignment:
Q  18 cacagatagtccacgtggttaaataaaaacaaaagaaaactcnnnnnnn-gttcaagtgataatataattagttgtggaaattcaacctcgtcttagtaa 116  Q
    ||||||||||||||||||||||||||||||||||||| | |         |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33417133 cacagatagtccacgtggttaaataaaaacaaaagaatatttttttttttgttcaagtaataatataattagttgtggaaattcaacctcgtcttagtaa 33417034  T
Q  117 aagccgaccaaatccggtagccgaatataatagcatacatatactctattattgtcgtgttgaaaaaatctatatacacacatctatataagaattgcac 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  33417033 aagccgaccaaatccggtagccgaatataatagcatacatatactctattattgtcgtgtcgataaaatctatatacacacatctatataagaattgcac 33416934  T
Q  217 aattcatcaaaatcaaaacaaataacatttgcgcagcatttgctagctagctattcttttgattgagattttatattctagggag-nnnnnnnntcttga 315  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||    
T  33416933 aattcatcaaaatcaaaacaaat---atttgcgcagcatttgctagctagctattcttttgattgagattttatattctagggagaaaaaaaaatcttga 33416837  T
Q  316 cactcannnnnnngaagttaatttctacaattagagagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttc 415  Q
    ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33416836 cactcattttttt-aagttaatttctacaattagagagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttc 33416738  T
Q  416 catttccatggttttactttcatcagttgcaat---tgcaactgatcacattgttggtgatgac 476  Q
    |||||||||||||||||||||||||||||||||   |||||||||| | |||||||||||||||    
T  33416737 catttccatggttttactttcatcagttgcaattgctgcaactgattatattgttggtgatgac 33416674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 330 - 476
Target Start/End: Complemental strand, 33424891 - 33424745
Alignment:
Q  330 aagttaatttctacaattagagagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttt 429  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33424891 aagttaatttctacatttagagagaaatattttccaaaatcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttt 33424792  T
Q  430 tactttcatcagttgcaattgcaactgatcacattgttggtgatgac 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33424791 tactttcatcagttgcaattgcaactgatcacattgttggtgatgac 33424745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 350 - 476
Target Start/End: Complemental strand, 33410956 - 33410830
Alignment:
Q  350 agagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaatt 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33410956 agagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttctatttccatggttttactttcatcagttgcaatt 33410857  T
Q  450 gcaactgatcacattgttggtgatgac 476  Q
    |||||||||||||||||||||||||||    
T  33410856 gcaactgatcacattgttggtgatgac 33410830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 81 - 198
Target Start/End: Complemental strand, 33411224 - 33411108
Alignment:
Q  81 ataattagttgtggaaattcaacctcgtcttagtaaaagccgaccaaatccggtagccgaatataatagcatacatatactctattattgtcgtgttgaa 180  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||| ||| ||| ||||||||||| |||  ||     
T  33411224 ataataagttgtggaaattcaacctcgtcttagtaaa-gccgaccaaatccggtagccgtttataatagcaaacaaatattctattattgttgtgacgat 33411126  T
Q  181 aaaatctatatacacaca 198  Q
    |||||| ||| |||||||    
T  33411125 aaaatcaatacacacaca 33411108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 33425145 - 33425054
Alignment:
Q  81 ataattagttgtggaaattcaacctcgtcttagtaaaa-gccgaccaaatccggtagccgaatataatagcatacatatactctattattgt 171  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||| ||| ||| |||||||||||    
T  33425145 ataataagttgtggaaattcaacctcgtcttagtaaaaagccgaccaaatccggtagccgtttataatagcaaacaaatattctattattgt 33425054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 33427441 - 33427508
Alignment:
Q  217 aattcatcaaaatcaaaacaaataacatttgcgcagcatttgctagctagctattcttttgattgagatt 286  Q
    ||||||||||| ||||||||| |||||||| || ||||||||||||||||| |||||||| |||||||||    
T  33427441 aattcatcaaa-tcaaaacaa-taacattttcgaagcatttgctagctagcaattcttttcattgagatt 33427508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 476
Target Start/End: Complemental strand, 33436903 - 33436844
Alignment:
Q  417 atttccatggttttactttcatcagttgcaattgcaactgatcacattgttggtgatgac 476  Q
    ||||| |||||||| ||||| ||||||||||| ||| | |||||||||||||||||||||    
T  33436903 atttcaatggttttgctttcttcagttgcaatggcagccgatcacattgttggtgatgac 33436844  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 457
Target Start/End: Original strand, 33427563 - 33427669
Alignment:
Q  349 gagagaaatattttccaaactcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaat 448  Q
    ||||||||||| || |||||  |||||||||||||||||   ||||||||||  | ||||||||  | ||||| ||||||||| |||| |||||||||||    
T  33427563 gagagaaatatatttcaaacctaaattttgatcaaatgg--gcttctcgtgtgttcttgatcctagctatttcaatggttttattttcctcagttgcaat 33427660  T
Q  449 tgcaactga 457  Q
     || |||||    
T  33427661 ggctactga 33427669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 33425259 - 33425227
Alignment:
Q  26 gtccacgtggttaaataaaaacaaaagaaaact 58  Q
    |||||||||||||||||||||||||||||||||    
T  33425259 gtccacgtggttaaataaaaacaaaagaaaact 33425227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 33411525 - 33411493
Alignment:
Q  26 gtccacgtggttaaataaaaacaaaagaaaact 58  Q
    ||||||||||||||||||||||||| |||||||    
T  33411525 gtccacgtggttaaataaaaacaaatgaaaact 33411493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 475
Target Start/End: Original strand, 24984670 - 24984775
Alignment:
Q  367 actcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgcaactgatcacattgt 466  Q
    |||||||||||||| ||||| ||| |||||||| | | |    |||| |||||||||||||||| ||||| ||||| ||||| ||| |||||||| ||||    
T  24984670 actcaaattttgataaaatgacttattctcgtgcaatcta---ccttgccatttccatggttttgctttcctcagtagcaatggcagctgatcacgttgt 24984766  T
Q  467 tggtgatga 475  Q
     ||||||||    
T  24984767 gggtgatga 24984775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 475
Target Start/End: Original strand, 24990500 - 24990605
Alignment:
Q  367 actcaaattttgatcaaatggcttcttctcgtgtagttttgatcctttccatttccatggttttactttcatcagttgcaattgcaactgatcacattgt 466  Q
    |||||||||||||| ||||| ||| |||||||| | | |    |||| |||||||||||||||| ||||| ||||| ||||| ||| |||||||| ||||    
T  24990500 actcaaattttgataaaatgacttattctcgtgcaatcta---ccttgccatttccatggttttgctttcctcagtagcaatggcagctgatcacgttgt 24990596  T
Q  467 tggtgatga 475  Q
     ||||||||    
T  24990597 gggtgatga 24990605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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