View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5717_high_22 (Length: 481)

Name: NF5717_high_22
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5717_high_22
NF5717_high_22
[»] chr6 (10 HSPs)
chr6 (1-464)||(8915193-8915662)
chr6 (9-222)||(20985853-20986066)
chr6 (9-93)||(5376980-5377064)
chr6 (9-93)||(5378835-5378919)
chr6 (12-93)||(1088701-1088782)
chr6 (13-93)||(19645349-19645429)
chr6 (12-58)||(9415205-9415251)
chr6 (34-93)||(15149108-15149167)
chr6 (9-51)||(24544763-24544805)
chr6 (9-79)||(30488552-30488621)
[»] chr2 (4 HSPs)
chr2 (102-221)||(18776738-18776857)
chr2 (9-93)||(29758222-29758306)
chr2 (15-93)||(8759115-8759193)
chr2 (9-77)||(18612085-18612153)
[»] chr4 (9 HSPs)
chr4 (83-221)||(27737757-27737895)
chr4 (9-80)||(56074691-56074762)
chr4 (10-79)||(52545149-52545217)
chr4 (9-93)||(18656210-18656294)
chr4 (9-93)||(7040463-7040547)
chr4 (9-93)||(23564720-23564804)
chr4 (9-93)||(54296530-54296614)
chr4 (1-44)||(52520753-52520796)
chr4 (1-44)||(52518911-52518954)
[»] scaffold0311 (4 HSPs)
scaffold0311 (83-221)||(13387-13525)
scaffold0311 (128-221)||(13065-13158)
scaffold0311 (128-221)||(13226-13319)
scaffold0311 (149-215)||(15017-15083)
[»] chr7 (9 HSPs)
chr7 (83-221)||(31822306-31822444)
chr7 (9-93)||(28014318-28014402)
chr7 (83-174)||(7165586-7165677)
chr7 (9-76)||(20046540-20046607)
chr7 (9-93)||(44963265-44963349)
chr7 (9-93)||(25471816-25471900)
chr7 (1-44)||(28124624-28124667)
chr7 (1-44)||(28126451-28126494)
chr7 (9-74)||(8405628-8405693)
[»] scaffold0057 (1 HSPs)
scaffold0057 (9-93)||(58888-58971)
[»] chr3 (4 HSPs)
chr3 (9-93)||(17402827-17402911)
chr3 (9-93)||(1140103-1140187)
chr3 (9-93)||(6789722-6789805)
chr3 (149-221)||(36472287-36472359)
[»] scaffold0006 (1 HSPs)
scaffold0006 (14-80)||(39259-39325)
[»] chr8 (11 HSPs)
chr8 (9-79)||(31032049-31032118)
chr8 (9-93)||(5567528-5567612)
chr8 (13-93)||(3379164-3379243)
chr8 (9-93)||(30224332-30224416)
chr8 (13-78)||(19473649-19473713)
chr8 (13-78)||(19544574-19544638)
chr8 (13-78)||(19588058-19588122)
chr8 (9-93)||(25249108-25249192)
chr8 (9-80)||(14939630-14939700)
chr8 (12-57)||(6428879-6428924)
chr8 (122-210)||(26680849-26680937)
[»] scaffold0189 (1 HSPs)
scaffold0189 (1-78)||(19063-19139)
[»] chr5 (3 HSPs)
chr5 (9-58)||(20012968-20013017)
chr5 (31-93)||(25076182-25076244)
chr5 (31-93)||(25134151-25134213)
[»] chr1 (5 HSPs)
chr1 (9-80)||(5924831-5924901)
chr1 (9-69)||(17449436-17449496)
chr1 (1-93)||(48941702-48941798)
chr1 (1-44)||(16808615-16808658)
chr1 (71-112)||(38999865-38999906)


Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 8915662 - 8915193
Alignment:
1 aagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtacatactaat 100  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |    
8915662 aagagagcaagcataagagtactcgtgtggaagatactcatagaaacttattatagaaatgaatagattaataaaagatgctaaatgagtacataatagt 8915563  T
101 ccttatttataggacttaatggactaaccaattgtttaattaacttccaactccacaaactaacttataactaactattaagtaatcctaattaaccaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
8915562 ccttatttataggacttaatggactaaccaattgtttaattaacttccaactccacgaactaacttataactaactattaagtaatcctaattaaccaac 8915463  T
201 tgaatcctaagaatcttaacacactatgataatgtcacaaattgtttaatgacactttgattcattgtgaccttaggatctgtgcttccatgtaatgttt 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |    
8915462 tgaatcctaagaatcttaacacactgtgataatgtcacaaattgtttaatgacactttgatt-tttgtgaccttaggatctgtgcttccatgtaatgtat 8915364  T
301 at-------acttggtctaatagacaaattgacgaggatcgtattaaggaacaaatcgatatattttgtattaataacgcaattttatgatcaagtaatt 393  Q
    ||       |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
8915363 atacttggaacttggtctaatagacaaattgacaaggatcgtattaaggaacaaattgatatattttgtattaataacgcaattttatgatcaagtaatt 8915264  T
394 tagtttaattttccattttgaacactacacttttaaaatttgcaaatttattgatcttggctagttaattt 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8915263 tagtttaattttccattttgaacactacacttttaaaatttgcaaatttattgatcttggctagttaattt 8915193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 20985853 - 20986066
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtacatactaatccttattt 108  Q
    |||||||||||||||| ||||| ||||||| ||| ||| |||||||||||||||||||||| |||||||||   |||||||||||||||| ||| |||||    
20985853 aagcataagagtactcatgtggtagatacttataaaaattcattatagaaatgaatagattgataaaagatagcaaatgagtacatactagtccatattt 20985952  T
109 ataggacttaatggactaaccaattgtttaattaacttccaactccacaaactaacttataactaactattaagtaatcctaattaaccaactgaatcct 208  Q
    |||||||||||||||||||| || ||| ||| ||||||| |||||||| ||||||||| |||||||||||||| ||||| |||||||| |||| ||||||    
20985953 ataggacttaatggactaacaaactgtgtaactaacttctaactccactaactaacttgtaactaactattaactaatcttaattaacaaactaaatcct 20986052  T
209 aagaatcttaacac 222  Q
    ||||||||||||||    
20986053 aagaatcttaacac 20986066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 5377064 - 5376980
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||  | ||||||||||    
5377064 aagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagatattgaatgagtaca 5376980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 5378919 - 5378835
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||  | ||||||||||    
5378919 aagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagatattgaatgagtaca 5378835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 1088701 - 1088782
Alignment:
12 cataagagtactcgtgtgggagatactcata-gaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    ||||||||||||| | ||||||||||||| | |||||||||||||||| |||||||||| |||||||||| | ||||||||||    
1088701 cataagagtactcatatgggagatactcaaaagaaactcattatagaa-tgaatagattgataaaagatgatgaatgagtaca 1088782  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 19645349 - 19645429
Alignment:
13 ataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    |||||||||||| || |||||||||||| ||||| ||||| ||||||| |||||||| |||||||||  | ||||||||||    
19645349 ataagagtactcatgagggagatactcaaagaaattcattgtagaaataaatagattgataaaagataatgaatgagtaca 19645429  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 9415251 - 9415205
Alignment:
12 cataagagtactcgtgtgggagatactcatagaaactcattatagaa 58  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||    
9415251 cataagagtactcatgtgggagatactcatagaaactcattgtagaa 9415205  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 15149108 - 15149167
Alignment:
34 atactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    ||||||| ||||||||||| |||||||||||||||| |||||||||  | ||||||||||    
15149108 atactcaaagaaactcattgtagaaatgaatagattgataaaagataatgaatgagtaca 15149167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 24544805 - 24544763
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcat 51  Q
    |||||||||||||||| || |||||||||||||||||||||||    
24544805 aagcataagagtactcatgagggagatactcatagaaactcat 24544763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 30488621 - 30488552
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagat 79  Q
    |||||||| | ||||| ||||| ||||||  ||| ||||||||||||| |||||||||||| |||||||||    
30488621 aagcataaaaatactcatgtggaagataccgataaaaactcattatag-aatgaatagattgataaaagat 30488552  T

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Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 102 - 221
Target Start/End: Complemental strand, 18776857 - 18776738
Alignment:
102 cttatttataggacttaatggactaaccaattgtttaattaacttccaactccacaaactaacttataactaactattaagtaatcctaattaaccaact 201  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||    
18776857 cttatttataggacttaatggactaaccaattgtgtaactaacttccaactccactaactaacttgtaactaactattaactaatcctaattaaccaact 18776758  T
202 gaatcctaagaatcttaaca 221  Q
     |||| ||||||||||||||    
18776757 taatcttaagaatcttaaca 18776738  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 29758306 - 29758222
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    |||||||||||||||| || |||||||||||| || |||||||| |||||||||||||||| |||||||||  | ||||||||||    
29758306 aagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaatgagtaca 29758222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 8759115 - 8759193
Alignment:
15 aagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    |||||||||| || |||||||||||| ||||||||||| |||||||||| ||||| |||||||||| | ||||||||||    
8759115 aagagtactcatgagggagatactcaaagaaactcattgtagaaatgaacagattgataaaagatgatgaatgagtaca 8759193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 18612085 - 18612153
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaag 77  Q
    |||||||||||||||| ||||||||||| | | | |||||||||||||||||||||||||| |||||||    
18612085 aagcataagagtactcatgtgggagatatttacaaaaactcattatagaaatgaatagattgataaaag 18612153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 27737895 - 27737757
Alignment:
83 aaatgagtacatactaatccttatttataggacttaatggactaaccaattgtttaattaacttccaactccacaaactaacttataactaactattaag 182  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||| |||||||| ||||||||| ||||||||||||||     
27737895 aaatgagtacatactagtccttatttataggacttattggactaaccaattgtgtaactaacttcaaactccactaactaacttgtaactaactattaac 27737796  T
183 taatcctaattaaccaactgaatcctaagaatcttaaca 221  Q
    ||| ||||||||||    | |||||||||||||||||||    
27737795 taaccctaattaacactttaaatcctaagaatcttaaca 27737757  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 56074691 - 56074762
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatg 80  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| | ||||||||||    
56074691 aagcataagagtactcatgtgggagatactcatagaaactcgttatagaaatgaatagaatgataaaagatg 56074762  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 52545149 - 52545217
Alignment:
10 agcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagat 79  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
52545149 agcataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgataaaagat 52545217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 18656294 - 18656210
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    |||||||||||||||| || |||||||||||| || |||||||| |||||||||||||||| |||||||||| | ||||||||||    
18656294 aagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatgatgaatgagtaca 18656210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 7040547 - 7040463
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    |||||||||||||||| || |||||||||||| || |||||||| |||||||||||||||| |||||||||  | ||||||||||    
7040547 aagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaatgagtaca 7040463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 23564720 - 23564804
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    |||||||||||||||| || |||||||||||| || |||||||| |||||||||||||||| |||||||||  | ||||||||||    
23564720 aagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaatgagtaca 23564804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 54296614 - 54296530
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagatt-aataaaagatgctaaatgagtaca 93  Q
    |||||||||||||||  || ||||||||||||||||||||||||||| |||||||| |||| | ||||||||  | ||||||||||    
54296614 aagcataagagtactgatgagggagatactcatagaaactcattata-aaatgaattgattgattaaaagatcatgaatgagtaca 54296530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 52520796 - 52520753
Alignment:
1 aagagagaaagcataagagtactcgtgtgggagatactcataga 44  Q
    ||||||| |||||||||||||||| |||||||||||||||||||    
52520796 aagagagcaagcataagagtactcatgtgggagatactcataga 52520753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 52518954 - 52518911
Alignment:
1 aagagagaaagcataagagtactcgtgtgggagatactcataga 44  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||    
52518954 aagagagcaagcataagagaactcatgtgggagatactcataga 52518911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 71; Significance: 6e-32; HSPs: 4)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 13525 - 13387
Alignment:
83 aaatgagtacatactaatccttatttataggacttaatggactaaccaattgtttaattaacttccaactccacaaactaacttataactaactattaag 182  Q
    |||||||||||||||| ||| ||||||||||||| | | |||||||||||||| ||| ||||||| |||| ||| ||||||||| ||||||||||||||     
13525 aaatgagtacatactagtccatatttataggactaattagactaaccaattgtgtaactaacttcaaactacactaactaacttgtaactaactattaac 13426  T
183 taatcctaattaaccaactgaatcctaagaatcttaaca 221  Q
    ||| || |||||||  ||| |||||||||||||||||||    
13425 taacccaaattaacacactaaatcctaagaatcttaaca 13387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 13158 - 13065
Alignment:
128 ccaattgtttaattaacttccaactccacaaactaacttataactaactattaagtaatcctaattaaccaactgaatcctaagaatcttaaca 221  Q
    |||||||| ||| ||||||| |||| ||| ||||||||| |||||||||||||| ||| || |||||||  ||| |||||||||||||||||||    
13158 ccaattgtgtaactaacttcaaactacactaactaacttgtaactaactattaactaacccaaattaacacactaaatcctaagaatcttaaca 13065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 13319 - 13226
Alignment:
128 ccaattgtttaattaacttccaactccacaaactaacttataactaactattaagtaatcctaattaaccaactgaatcctaagaatcttaaca 221  Q
    |||||||| ||| ||||||| |||| ||| ||||||||| |||||||||||||| ||| || |||||||  ||| |||||||||||||||||||    
13319 ccaattgtgtaactaacttcaaactacactaactaacttgtaactaactattaactaacccaaattaacacactaaatcctaagaatcttaaca 13226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 15083 - 15017
Alignment:
149 aactccacaaactaacttataactaactattaagtaatcctaattaaccaactgaatcctaagaatc 215  Q
    |||| ||| ||||||||| |||||||||||||| ||| ||||||||||  ||| |||||||||||||    
15083 aactacactaactaacttgtaactaactattaactaaccctaattaacacactaaatcctaagaatc 15017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 83 - 221
Target Start/End: Original strand, 31822306 - 31822444
Alignment:
83 aaatgagtacatactaatccttatttataggacttaatggactaaccaattgtttaattaacttccaactccacaaactaacttataactaactattaag 182  Q
    |||||||||||||||  ||| ||||||||||||| |   |||||||||||||| ||| ||||||| |||||||| ||||||||| |||| |||||||||     
31822306 aaatgagtacatacttgtccatatttataggactaatcagactaaccaattgtgtaactaacttcaaactccactaactaacttgtaaccaactattaac 31822405  T
183 taatcctaattaaccaactgaatcctaagaatcttaaca 221  Q
    ||| ||||||||||  ||| |||||||| ||||||||||    
31822406 taaccctaattaacacactaaatcctaataatcttaaca 31822444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 28014318 - 28014402
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    |||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||   ||||||||||    
28014318 aagcataagagtgctcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagatgaataatgagtaca 28014402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 7165677 - 7165586
Alignment:
83 aaatgagtacatactaatccttatttataggacttaatggactaaccaattgtttaattaacttccaactccacaaactaacttataactaa 174  Q
    |||||||||||||||| ||| ||||||||||||||| |||||||||||||||| ||| ||||||| |||||||| ||||||||  |||||||    
7165677 aaatgagtacatactagtccatatttataggacttattggactaaccaattgtgtaactaacttcaaactccactaactaactattaactaa 7165586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 20046540 - 20046607
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaa 76  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||    
20046540 aagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaa 20046607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 44963349 - 44963265
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    ||||||||||||| || || |||||||||||| ||||| ||||| |||||||||||||||| |||||||||| | ||||||||||    
44963349 aagcataagagtattcatgagggagatactcaaagaaattcattgtagaaatgaatagattgataaaagatgatgaatgagtaca 44963265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 25471816 - 25471900
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    |||||||||| || ||  |||||||||||| |||||||||||||||| ||||||||||||| ||||||||||   ||||||||||    
25471816 aagcataagattattcacgtgggagatactaatagaaactcattatataaatgaatagattgataaaagatgaataatgagtaca 25471900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28124624 - 28124667
Alignment:
1 aagagagaaagcataagagtactcgtgtgggagatactcataga 44  Q
    ||||||| |||||||||||||||| |||||||||||||||||||    
28124624 aagagagcaagcataagagtactcatgtgggagatactcataga 28124667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28126451 - 28126494
Alignment:
1 aagagagaaagcataagagtactcgtgtgggagatactcataga 44  Q
    ||||||| |||||||||||||||| |||||||||||||||||||    
28126451 aagagagcaagcataagagtactcatgtgggagatactcataga 28126494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 8405693 - 8405628
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataa 74  Q
    ||||||||||||| || || |||||||| || |||||||||||| ||||||||| |||||| ||||    
8405693 aagcataagagtattcatgggggagataatcgtagaaactcattgtagaaatgactagattgataa 8405628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 58971 - 58888
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| | ||||||||||    
58971 aagcataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgataaaagatgatgaatgagtaca 58888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 17402827 - 17402911
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||  | ||||||||||    
17402827 aagcataagagtactcatgtgggagatactcatagaaactcattgtagaaatgaatagattgataaaagatattgaatgagtaca 17402911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 1140187 - 1140103
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    |||||||||||||||| || |||||||||||| || |||||||| |||||||||||||||| |||||||||| | ||||||||||    
1140187 aagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatgatgaatgagtaca 1140103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 6789805 - 6789722
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| | |||||||  | ||||||||||    
6789805 aagcataagagtactcatgtgggagatactcatagaaactcattgtag-aatgaatagattgaaaaaagatagtgaatgagtaca 6789722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 36472359 - 36472287
Alignment:
149 aactccacaaactaacttataactaactattaagtaatcctaattaaccaactgaatcctaagaatcttaaca 221  Q
    |||||||| ||||||||| |||||||||||||| |||  |||||||||  ||| |||||||||||||||||||    
36472359 aactccactaactaacttgtaactaactattaactaactctaattaacacactaaatcctaagaatcttaaca 36472287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 39325 - 39259
Alignment:
14 taagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatg 80  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
39325 taagagtactcatgtgggagatactcataaaaactcattatagaaatgaatagattgataaaagatg 39259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 31032049 - 31032118
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagat 79  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
31032049 aagcataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgataaaagat 31032118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 5567612 - 5567528
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    |||||||||||||||| || |||||||||||| || |||||||| |||||||||||||||| |||||||||| | ||||||||||    
5567612 aagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatgatgaatgagtaca 5567528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 3379164 - 3379243
Alignment:
13 ataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| ||| | ||||||||||    
3379164 ataaaagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgataaaaaatgatgaatgagtaca 3379243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 30224416 - 30224332
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    |||||||||||||||| || |||||||||||| || |||||||| |||||||||||||||| |||||||||  | ||||||||||    
30224416 aagcataagagtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagataatgaatgagtaca 30224332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 19473713 - 19473649
Alignment:
13 ataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaaga 78  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||    
19473713 ataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgatagaaga 19473649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 19544638 - 19544574
Alignment:
13 ataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaaga 78  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||    
19544638 ataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgatagaaga 19544574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 19588058 - 19588122
Alignment:
13 ataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaaga 78  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| ||||    
19588058 ataagagtactcatgtgggagatactcatagaaactcattatag-aatgaatagattgatagaaga 19588122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 25249192 - 25249108
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    ||||||||| |||||| || |||||||||||| || |||||||| |||||||||||||||| |||||||||  | ||||||||||    
25249192 aagcataagggtactcatgagggagatactcaaagtaactcattgtagaaatgaatagattgataaaagatcatgaatgagtaca 25249108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 14939700 - 14939630
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatg 80  Q
    ||||||| |||||||| ||| | |||||||| |||||||||||||||| |||||||||||| ||||||||||    
14939700 aagcatatgagtactcatgtagaagatactcgtagaaactcattatag-aatgaatagattgataaaagatg 14939630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 6428924 - 6428879
Alignment:
12 cataagagtactcgtgtgggagatactcatagaaactcattataga 57  Q
    ||||||||||||| |||| |||||||||| ||||||||||| ||||    
6428924 cataagagtactcatgtgagagatactcaaagaaactcattgtaga 6428879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 26680937 - 26680849
Alignment:
122 gactaaccaattgtttaattaacttccaactccacaaactaact-tataactaactattaagtaatcctaattaaccaactgaatcctaa 210  Q
    |||||||||||||| |||  |||||| |||| | | |||||| | | |||||||||| ||| ||||||||||||||||||| ||||||||    
26680937 gactaaccaattgtgtaaccaacttctaacttctctaactaattgtgtaactaactaataactaatcctaattaaccaact-aatcctaa 26680849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 19139 - 19063
Alignment:
1 aagagagaaagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaaga 78  Q
    |||| |||||||||| |||||||| |||||||||| |||||||||||||||||||| |||||||||||| ||||||||    
19139 aagatagaaagcataggagtactcatgtgggagatgctcatagaaactcattatag-aatgaatagattgataaaaga 19063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 20012968 - 20013017
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaa 58  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
20012968 aagcataagagtactcatgtgggagatactcatagaaactcattatagaa 20013017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 25076182 - 25076244
Alignment:
31 gagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||||||| | || |||||||    
25076182 gagatattcatagaaactcattatagaaatgaatatattgataaaagatgatgaaagagtaca 25076244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 25134151 - 25134213
Alignment:
31 gagatactcatagaaactcattatagaaatgaatagattaataaaagatgctaaatgagtaca 93  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||||||| | || |||||||    
25134151 gagatattcatagaaactcattatagaaatgaatatattgataaaagatgatgaaagagtaca 25134213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 5924831 - 5924901
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagattaataaaagatg 80  Q
    ||||||||||||| || | | ||||||||||||||||||||||||||| |||||||||||| ||||||||||    
5924831 aagcataagagtattcatataggagatactcatagaaactcattatag-aatgaatagattgataaaagatg 5924901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 17449496 - 17449436
Alignment:
9 aagcataagagtactcgtgtgggagatactcatagaaactcattatagaaatgaatagatt 69  Q
    ||||| |||||||||| |||||||||||||||||||| |||||| |||| |||||||||||    
17449496 aagcaaaagagtactcatgtgggagatactcatagaatctcattgtagacatgaatagatt 17449436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 48941798 - 48941702
Alignment:
1 aagagagaaagcataagagtactcgtgtgggagatactcatagaaactcat--tatagaaatgaatagatt--aataaaagatgctaaatgagtaca 93  Q
    ||||||| ||| ||||||||| || |||| |||||||||||| ||||||||  ||||||||||||||||||  | |||||||| || ||||||||||    
48941798 aagagagcaagtataagagtattcatgtgagagatactcatataaactcattatatagaaatgaatagatttgattaaaagatactgaatgagtaca 48941702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 16808615 - 16808658
Alignment:
1 aagagagaaagcataagagtactcgtgtgggagatactcataga 44  Q
    ||||||| |||||||||||||||| ||| |||||||||||||||    
16808615 aagagagcaagcataagagtactcatgtcggagatactcataga 16808658  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 38999865 - 38999906
Alignment:
71 ataaaagatgctaaatgagtacatactaatccttatttatag 112  Q
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38999865 ataaaagatgataaatgagtacatactagttcttatttatag 38999906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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