View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5717_high_26 (Length: 452)

Name: NF5717_high_26
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5717_high_26
NF5717_high_26
[»] chr7 (11 HSPs)
chr7 (17-441)||(41760205-41760629)
chr7 (159-249)||(37928265-37928355)
chr7 (161-252)||(23142707-23142799)
chr7 (192-246)||(11736227-11736281)
chr7 (215-249)||(18221174-18221208)
chr7 (192-252)||(16685729-16685790)
chr7 (192-252)||(17659965-17660026)
chr7 (192-252)||(3624279-3624339)
chr7 (215-246)||(1703935-1703966)
chr7 (191-246)||(7833805-7833860)
chr7 (161-252)||(45907089-45907179)
[»] chr5 (3 HSPs)
chr5 (163-252)||(7319227-7319316)
chr5 (214-252)||(14044735-14044773)
chr5 (191-231)||(8435054-8435094)
[»] chr4 (5 HSPs)
chr4 (164-252)||(20775042-20775130)
chr4 (208-252)||(31152188-31152232)
chr4 (191-252)||(27284069-27284130)
chr4 (191-252)||(52837322-52837383)
chr4 (192-252)||(31647720-31647779)
[»] chr8 (3 HSPs)
chr8 (190-293)||(3137396-3137499)
chr8 (190-246)||(24757109-24757165)
chr8 (197-249)||(44648996-44649048)
[»] chr3 (6 HSPs)
chr3 (163-252)||(24344800-24344889)
chr3 (162-252)||(36436552-36436642)
chr3 (160-249)||(48338779-48338868)
chr3 (159-249)||(49543170-49543260)
chr3 (191-246)||(635766-635821)
chr3 (192-252)||(53818824-53818884)
[»] chr6 (2 HSPs)
chr6 (189-252)||(10008188-10008251)
chr6 (192-246)||(19418593-19418647)
[»] chr2 (4 HSPs)
chr2 (165-252)||(4978807-4978894)
chr2 (165-252)||(4996715-4996802)
chr2 (215-246)||(36622124-36622155)
chr2 (192-249)||(13738453-13738510)
[»] chr1 (2 HSPs)
chr1 (196-252)||(46295926-46295982)
chr1 (192-249)||(13969157-13969214)


Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Complemental strand, 41760629 - 41760205
Alignment:
Q  17 ataggaaggaagaatcatggtaataaattggtgtgatcttattgccaatagtattcaaactcttcccataatcatttccgagtatttgcatcgcatgcaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41760629 ataggaaggaagaatcatggtaataaattggtgtgatcttattgccaatagtattcaaactcttcccataatcatttccgagtatttgcatcgcatgcaa 41760530  T
Q  117 tatttttcatttcctttattggtttctcttttttacaatatgtataaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaata 216  Q
    |||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41760529 tatttttcatttccttcattggtttctcttttttacaatatgttttaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaata 41760430  T
Q  217 agattttattaaaaagttgtgtaataattacttgatnnnnnnnnnnnncttacattttcaagacataatttctatttttagtttctttaactagtgtccc 316  Q
    ||||||||||||||||||||||||||||||||||||            |||||||||| |||||||||||||||||||||||||||||||| |||| |||    
T  41760429 agattttattaaaaagttgtgtaataattacttgataaaaaataaaaacttacatttttaagacataatttctatttttagtttctttaaccagtgcccc 41760330  T
Q  317 agagacacatgttaataaaaccctatgtttaatagtttctacactatggtatatgcaaatataccatttttatgcttttaatctgtgtagaaagttactt 416  Q
     || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41760329 tgaaacacaggttaacaaaaccctatgtttaatagtttctacactatggtatatgcaaatataccatttttatgcttttaatctgtgtagaaagttactt 41760230  T
Q  417 ggaaaatatttattgtaatattcat 441  Q
    |||||||||||||||||||||||||    
T  41760229 ggaaaatatttattgtaatattcat 41760205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 37928265 - 37928355
Alignment:
Q  159 tataaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 249  Q
    |||| ||| |||| ||| |||||| ||| ||||||||||||| |||||||||  | |||| |||||| |||||||||||||||||||||||    
T  37928265 tatatggaaaatgctaactagtgtctcaaggacattggttaaacatccaaaataagtaagtttttataaaaaagttgtgtaataattactt 37928355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 23142799 - 23142707
Alignment:
Q  161 taaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaa-gttgtgtaataattacttgat 252  Q
    |||||||||||||||  ||||| ||| |  |||||||||| |||||||||  | |||| |||||| ||||| |||||||||||||||||||||    
T  23142799 taaggagaatgttaacgagtgtctcaagagcattggttaaacatccaaaataagtaagtttttatgaaaaaagttgtgtaataattacttgat 23142707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 11736281 - 11736227
Alignment:
Q  192 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 246  Q
    |||||||||||| ||||||  | ||||||||||||||||||| ||||||||||||    
T  11736281 attggttaagcagccaaaagaagtaagattttattaaaaagtggtgtaataatta 11736227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 18221208 - 18221174
Alignment:
Q  215 taagattttattaaaaagttgtgtaataattactt 249  Q
    |||||||||||||||||||||||||||||||||||    
T  18221208 taagattttattaaaaagttgtgtaataattactt 18221174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 16685729 - 16685790
Alignment:
Q  192 attggttaagcatccaaaaagaataagattttatt-aaaaagttgtgtaataattacttgat 252  Q
    |||||||||||||||||||  | |||| ||||||| ||||||||||||||| ||||||||||    
T  16685729 attggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgat 16685790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 17659965 - 17660026
Alignment:
Q  192 attggttaagcatccaaaaagaataagattttatt-aaaaagttgtgtaataattacttgat 252  Q
    |||||||||||||||||||  | |||| ||||||| ||||||||||||||| ||||||||||    
T  17659965 attggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgat 17660026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 3624339 - 3624279
Alignment:
Q  192 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 252  Q
    ||||||||||||| ||||   | ||||||||||||||||||| |||||||||||| |||||    
T  3624339 attggttaagcattcaaaggaagtaagattttattaaaaagtggtgtaataattatttgat 3624279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 246
Target Start/End: Complemental strand, 1703966 - 1703935
Alignment:
Q  215 taagattttattaaaaagttgtgtaataatta 246  Q
    ||||||||||||||||||||||||||||||||    
T  1703966 taagattttattaaaaagttgtgtaataatta 1703935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 7833860 - 7833805
Alignment:
Q  191 cattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 246  Q
    ||||||||||||| ||||||  | ||||||||||||||||||| ||| ||||||||    
T  7833860 cattggttaagcagccaaaacaagtaagattttattaaaaagtagtgcaataatta 7833805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 45907179 - 45907089
Alignment:
Q  161 taaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaa-taagattttattaaaaagttgtgtaataattacttgat 252  Q
    |||||||||||||||  |||||  |  ||| |||||||||||||  |||||||| |||| ||||||||||||||  |||||| ||||||||||    
T  45907179 taaggagaatgttaaccagtgtccccgggatattggttaagcat--aaaaagaagtaagtttttattaaaaagtaatgtaattattacttgat 45907089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 7319227 - 7319316
Alignment:
Q  163 aggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 252  Q
    |||||||||||||| ||||   ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  7319227 aggagaatgttaaacagtgccccatgggcattggttaagcatccaaaaagagtaagattctattaaaaagttgtgtaataattacttgat 7319316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 14044773 - 14044735
Alignment:
Q  214 ataagattttattaaaaagttgtgtaataattacttgat 252  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  14044773 ataagtttttataaaaaagttgtgtaataattacttgat 14044735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 8435054 - 8435094
Alignment:
Q  191 cattggttaagcatccaaaaagaataagattttattaaaaa 231  Q
    ||||||||||||||||||||  | |||||||||||||||||    
T  8435054 cattggttaagcatccaaaataagtaagattttattaaaaa 8435094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 20775042 - 20775130
Alignment:
Q  164 ggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 252  Q
    |||||||| ||||||||| | ||  ||||||||||||||||||||||  | |||| |||||| |||||||| ||||||||||| |||||    
T  20775042 ggagaatgctaaatagtgctccaaagacattggttaagcatccaaaacaagtaagtttttatgaaaaagttatgtaataattatttgat 20775130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 31152232 - 31152188
Alignment:
Q  208 aaaagaataagattttattaaaaagttgtgtaataattacttgat 252  Q
    |||||||||||||||||||||||| |||||| ||||||| |||||    
T  31152232 aaaagaataagattttattaaaaaattgtgttataattatttgat 31152188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 27284069 - 27284130
Alignment:
Q  191 cattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 252  Q
    |||||||||| |||||||||  |||||| |||||| ||||||||||| ||| |||| |||||    
T  27284069 cattggttaaacatccaaaataaataagtttttataaaaaagttgtgcaatcattatttgat 27284130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 52837383 - 52837322
Alignment:
Q  191 cattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 252  Q
    ||||||||||||||||||||  |  ||  |||||| ||||||||||||||||||||| ||||    
T  52837383 cattggttaagcatccaaaacaagaaaatttttatgaaaaagttgtgtaataattacgtgat 52837322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 31647720 - 31647779
Alignment:
Q  192 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 252  Q
    |||||||||||| ||||||  |||||| ||||||||||||||  |||||| ||||||||||    
T  31647720 attggttaagca-ccaaaagaaataagtttttattaaaaagtaatgtaattattacttgat 31647779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 293
Target Start/End: Original strand, 3137396 - 3137499
Alignment:
Q  190 acattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgatnnnnnnnnnnnncttacattttcaagacataatttct 289  Q
    |||||||||| ||||||||||  |||||| || ||| ||||||||||||||||||||||||||            ||||||||||||||||| |||||||    
T  3137396 acattggttaggcatccaaaacaaataagtttatatgaaaaagttgtgtaataattacttgatcaaaagtaacatcttacattttcaagacaaaatttct 3137495  T
Q  290 attt 293  Q
    ||||    
T  3137496 attt 3137499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 24757165 - 24757109
Alignment:
Q  190 acattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 246  Q
    |||||||||||||| | ||||   ||||||||||||||||||||  |||||||||||    
T  24757165 acattggttaagcagctaaaagagataagattttattaaaaagtgatgtaataatta 24757109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 44649048 - 44648996
Alignment:
Q  197 ttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 249  Q
    ||||||||||||||  |||||| ||| || ||||||||||||||| |||||||    
T  44649048 ttaagcatccaaaacaaataagttttcatgaaaaagttgtgtaatcattactt 44648996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 24344800 - 24344889
Alignment:
Q  163 aggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaa-taagattttattaaaaagttgtgtaataattacttgat 252  Q
    |||||||||||||| ||||| ||| || ||||||||||||||  |||||||| ||| |||| | ||||||||||||||||||||| |||||    
T  24344800 aggagaatgttaaacagtgtctcaggggcattggttaagcat-aaaaaagaagtaatatttaactaaaaagttgtgtaataattatttgat 24344889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 36436552 - 36436642
Alignment:
Q  162 aaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 252  Q
    |||||||||||||||  |||  |||||| ||| |||||| |||| ||||  ||||||||||||||||||||| ||| |||||||| |||||    
T  36436552 aaggagaatgttaaaccgtgcctcatgggcatgggttaaacatctaaaataaataagattttattaaaaagtagtgcaataattatttgat 36436642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 48338779 - 48338868
Alignment:
Q  160 ataaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 249  Q
    |||||||||||| ||| ||||| |  | || || |||||||||||||||||  | |||| |||||| |||||||||||||||||||||||    
T  48338779 ataaggagaatgctaactagtgctctaagggcaatggttaagcatccaaaacaagtaagtttttataaaaaagttgtgtaataattactt 48338868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 49543170 - 49543260
Alignment:
Q  159 tataaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 249  Q
    ||||||||||||||||| ||||||   | ||||||||||||||||| ||||| || |||  ||| || |||||  ||||||||||||||||    
T  49543170 tataaggagaatgttaattagtgtcctaaggacattggttaagcattcaaaacgagtaaattttcatgaaaaaagtgtgtaataattactt 49543260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 635821 - 635766
Alignment:
Q  191 cattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 246  Q
    ||||||||||||||||||||   ||||| ||||||| |||||||||||||| ||||    
T  635821 cattggttaagcatccaaaacatataagtttttattgaaaagttgtgtaatcatta 635766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 53818824 - 53818884
Alignment:
Q  192 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 252  Q
    |||| ||||||||||||||  |||||| ||| || |||||||||| |||| ||||||||||    
T  53818824 attgattaagcatccaaaataaataagttttaatgaaaaagttgtataatcattacttgat 53818884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 10008188 - 10008251
Alignment:
Q  189 gacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 252  Q
    ||||||||||||||| ||||||  | |||| |||||||||||||| ||||||| ||||||||||    
T  10008188 gacattggttaagcaaccaaaagaagtaagtttttattaaaaagtggtgtaattattacttgat 10008251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 19418593 - 19418647
Alignment:
Q  192 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 246  Q
    |||||||||||||||||||  | |||||||||||||||||||  |||||||||||    
T  19418593 attggttaagcatccaaaagaagtaagattttattaaaaagtgatgtaataatta 19418647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 4978894 - 4978807
Alignment:
Q  165 gagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 252  Q
    ||||||| ||| ||||| | || | ||||||||||| |||||||||  |||||| |||||| |||| |||||||||| ||||||||||    
T  4978894 gagaatgataactagtgctacaagaacattggttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgat 4978807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 4996802 - 4996715
Alignment:
Q  165 gagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 252  Q
    ||||||| ||| ||||| | || | ||||||||||| |||||||||  |||||| |||||| |||| |||||||||| ||||||||||    
T  4996802 gagaatgataactagtgctacaagaacattggttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgat 4996715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 246
Target Start/End: Original strand, 36622124 - 36622155
Alignment:
Q  215 taagattttattaaaaagttgtgtaataatta 246  Q
    ||||||||||||||||||||||||||||||||    
T  36622124 taagattttattaaaaagttgtgtaataatta 36622155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 13738510 - 13738453
Alignment:
Q  192 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 249  Q
    |||||||||||||||||||  | |||| |||||| ||||| ||||||||| |||||||    
T  13738510 attggttaagcatccaaaacaagtaagtttttataaaaaaattgtgtaatcattactt 13738453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 46295982 - 46295926
Alignment:
Q  196 gttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 252  Q
    |||||||||||||||  |||||| |||||| |||||||||||| || ||||||||||    
T  46295982 gttaagcatccaaaacaaataagtttttatgaaaaagttgtgtcatgattacttgat 46295926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 13969214 - 13969157
Alignment:
Q  192 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 249  Q
    |||||||||||| ||||||  | |||| |||||| ||||| |||||||||||||||||    
T  13969214 attggttaagcaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattactt 13969157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University