View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_29 (Length: 418)
Name: NF5717_high_29
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 400
Target Start/End: Complemental strand, 39854501 - 39854121
Alignment:
| Q |
16 |
atggtggttcatgaatttgtggaagagcataaccatgatttacatctgcaagaaataattcatatgttgtcatctcaacaaaaagtttcagaattacact |
115 |
Q |
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| T |
39854501 |
atggtggttcatgaatttgtggaagagcataaccatgatttacatctgcaagaaacaattcatatgttgtcatctcaacgaaaagtttcagaattacact |
39854402 |
T |
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| Q |
116 |
gcaatgaaattgatttagcatatgatgatggcctacaacagaggaaatcatttcagtttgatatgagtaaagaaatgggatatgtagaactaacctggag |
215 |
Q |
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| T |
39854401 |
gcaatgaaattgatttagtatatgatgatggcctacaacagaggaaatcatttcagtttgat--gagtaaagaagtgggat--gtagaactaacttggag |
39854306 |
T |
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| Q |
216 |
tttacccgcgttgatcaacagactcatcttcgaaatagaagacaaatgagtatgataaatgggaaagttggttatcttttgtaatactttcagagaaagt |
315 |
Q |
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| T |
39854305 |
tttacccgcgttgatcaacagactcatcttcgaaatagaagacaaatgagtatgataaatggggaagttggttatcttttgcaatagtttcagagaaagt |
39854206 |
T |
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| Q |
316 |
caggtgaaaatccaactacataccatgcctgtcaactcgaggttgaagatcaaattacaaatgtgtactgggcagatgcaaggat |
400 |
Q |
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| T |
39854205 |
cgggtgaaaatccaacttcataccatgcctatcaactcgaggttgaagatcaaattacaaatgtgttctgggcagatgcaaggat |
39854121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 400
Target Start/End: Original strand, 21955507 - 21955885
Alignment:
| Q |
17 |
tggtggttcatgaatttgtggaagagcataaccatgatttacatctgcaagaaataattcatatgttgtcatctcaacaaaaagtttcagaattacactg |
116 |
Q |
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||||||| |||||||||| || || |||||||||||||||||||| | ||| | |||||||||||||||||||||||||||| ||| |||| || || |
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| T |
21955507 |
tggtggtgcatgaatttgcagaggaacataaccatgatttacatctatcacaaacacttcatatgttgtcatctcaacaaaaagtatcaaaatttcattg |
21955606 |
T |
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| Q |
117 |
caatgaaattgatttagcatatgatgatggcctacaacagaggaaatcatttcagtttgatatgagtaaagaaatgggatatgtagaactaacctggagt |
216 |
Q |
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|||||||||||||||| | |||||| | || |||||| |||||||| ||| | |||||| || ||||||| || || || ||| |||| ||| | |
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| T |
21955607 |
caatgaaattgatttaatagatgatgcttgcacacaacaaaggaaatcgtttga-tttgat--gaataaagaagtgtgag--gttgaagtaacttgggat |
21955701 |
T |
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| Q |
217 |
ttacccgcgttgatcaacagactcatcttcgaaatagaagacaaatgagtatgataaatgggaaagttggttatcttttgtaatactttcagagaaagtc |
316 |
Q |
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| T |
21955702 |
ttacccacattgatcaaaagattcatcttcgaaatagaagataaaagagtttgctaaatggaaaagttggttatcttttgcaatactttcagacaaaatc |
21955801 |
T |
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| Q |
317 |
aggtgaaaatccaactacataccatgcctgtcaactcgaggttgaagatcaaattacaaatgtgtactgggcagatgcaaggat |
400 |
Q |
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| T |
21955802 |
ggttgaaaatccaacttcataccatgcctgtcaactagatgttgaagatcaaatagcaaatgtgttttaggcagatgcaaggat |
21955885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 156
Target Start/End: Original strand, 11188625 - 11188717
Alignment:
| Q |
64 |
caagaaataattcatatgttgtcatctcaacaaaaagtttcagaattacactgcaatgaaattgatttagcatatgatgatggcctacaacag |
156 |
Q |
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||||||| || ||||| |||||||||||| ||||||||||||||| || || || |||||||| || || |||||| |||||| |||||| |
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| T |
11188625 |
caagaaacaactcatacattgtcatctcaaagaaaagtttcagaatttcaacgccatcaaattgatctaccagatgatgctggcctgcaacag |
11188717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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