View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5717_high_33 (Length: 400)
Name: NF5717_high_33
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 41027692 - 41027303
Alignment:
| Q |
1 |
agggtctgacgacccacatactaaatcagtggtcttgagaaagaaccgcctatttcgatcggttgggaggcttcctcgcttaattatttaatcgcctatt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41027692 |
agggtctgacgacccacatactgaatcagtggtcttgagaaagaaccgcctatttcgatcggttgggaggcttcctcgcttaattatttaatcgcctatt |
41027593 |
T |
|
| Q |
101 |
tgttgagatacatcaacatgatgattaattttagttgtgaacaacggatcacatttcttcggtgtggatttctcatgtcaaacaacatgttccactttcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41027592 |
tgttgagatacatcaacatgatgattatttttaggtgtgaacaacggatcacattttttcggtgtggatttctcatgtcaaacaacatgttccacttttg |
41027493 |
T |
|
| Q |
201 |
taattcaaatatgacattctcacccatgtgacacaatctattatgtcataactttattttttcagtagattcaattacatgaacatatttaattannnnn |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41027492 |
taattcaaatatgacattctcactcatgtgacacaatctattatgtcataactttattttttcagttaattcaattacatgaacatatttaattattttt |
41027393 |
T |
|
| Q |
301 |
nnactctgccacataaaaggttgaacactttgtacttctagcaacaattatacaatccttggtatgtttgcaggtattctgcgagaataa |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41027392 |
ttactctgccacataaaaggttgaacactttgtacttctagcaacaattatacaatccttggtatgtttgcaggtattctgcgagaataa |
41027303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University