View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5717_high_34 (Length: 397)

Name: NF5717_high_34
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5717_high_34
NF5717_high_34
[»] chr6 (1 HSPs)
chr6 (120-397)||(21161724-21162002)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 120 - 397
Target Start/End: Complemental strand, 21162002 - 21161724
Alignment:
Q  120 caattgctttcactttgatgaatc-ttctacaccagtaaactgatttcaccaaatccggcattctttttagcaaatcaaacgcacgcactcacaccattc 218  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21162002 caattgctttcactttgatgaatcgttctacactagtaaactgatttcaccaaatccggcattctttttagcaaatcaaacgcacccactcacaccattc 21161903  T
Q  219 attgtattgaactattctctgcaacttcattctttcaaagctcattcttaaatctcaatcattattgcaatcaaattcacaatgccatttttaaggttaa 318  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21161902 attgtattgaactattctctgcaacttcattctttcgaagctcattctcaaatctcaatcattattgcaatcaaattcacaatgccatttttaaggttaa 21161803  T
Q  319 ggtacaaagctcttagtgtttcttttaatgccaatttgattcttcatcctcgattattacactcattcaataatcctct 397  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21161802 ggtacaaagctctttgtgtttcttttaatgccaatttgattcttcatcctcgattattacactcattcaataatcctct 21161724  T

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