View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_38 (Length: 384)
Name: NF5717_high_38
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 370
Target Start/End: Original strand, 35742406 - 35742753
Alignment:
| Q |
20 |
tacataatacaaaatgaagatttttaagtaacggacagccagaaataagactctcgaatgcaccgggctcgaatctaacaaacaataagtgaagttcaag |
119 |
Q |
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| T |
35742406 |
tacataatacaaaatgaagatttttaagtaacggacagccagaaataagactctcgaatgcaccgggctcgaatctaacaaacaataagtgaagttcaag |
35742505 |
T |
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| Q |
120 |
caatctttcaaacccagagaaatcagatggaattgacaagtcaaatcctaaaaatttagagtacgtcaattccttacaagggaggaggtcgacaatatat |
219 |
Q |
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| T |
35742506 |
caatctttcaaacccagagaaatcaggtggaattgacaagtcaaatcctaaaaacttagagtacgtcaattccttacaag---ggaggtcgacaatatat |
35742602 |
T |
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| Q |
220 |
agcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgaccaaatcggaatccacttatcgaggtgttcaattgtga |
319 |
Q |
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| T |
35742603 |
agcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgacaaaatcggaatccacttatcgaggtgttcaattgtga |
35742702 |
T |
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| Q |
320 |
tctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcggcc |
370 |
Q |
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| T |
35742703 |
tctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcggcc |
35742753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 40 - 368
Target Start/End: Original strand, 35748794 - 35749116
Alignment:
| Q |
40 |
tttttaagtaacggacagccagaaataagactctcgaatgcaccgggctcgaatctaacaaacaataagtgaagttcaagcaatctttcaaacccagaga |
139 |
Q |
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|||| |||||| ||||||||||||||||||| ||| | |||||||| ||||||| ||||| |||||||||| | ||||||||||| ||| || ||| |
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| T |
35748794 |
ttttcaagtaatggacagccagaaataagaccctcaagtgcaccggactcgaatgtaacattagataagtgaagattaagcaatcttttaaagcctcaga |
35748893 |
T |
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| Q |
140 |
aatcagatggaattgacaagtcaaatcctaaaaatttagagtacgtcaattccttacaagggaggaggtcgacaatatatagcatttgatcgggatgtgt |
239 |
Q |
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| T |
35748894 |
aatcatgtggaattgacaagttaaatccggaaaatttgaagtaagtcaactccttacaagcgag------gacagtatatggcatttgatcgacatgtgt |
35748987 |
T |
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| Q |
240 |
ttcgtggttcacaagctcgagatgtttaatattcctctctgaccaaatcggaatccacttatcgaggtgttcaattgtgatctcaaatttgtagtcatta |
339 |
Q |
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| ||| ||||| |||||||||||||||||||| |||| ||| | | |||||||||| || |||| ||||||| |||||| || |||||||||| | |
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| T |
35748988 |
tccgtagttcaaaagctcgagatgtttaatatccctcctagacaagaacggaatccacgtactgaggaattcaattatgatcttgaaattgtagtcataa |
35749087 |
T |
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| Q |
340 |
gatatgaaaagaccaaacttatctatcgg |
368 |
Q |
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| T |
35749088 |
ggtatgaaaagatgaaacttatgtatcgg |
35749116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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