View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5717_high_39 (Length: 380)
Name: NF5717_high_39
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 33262033 - 33261721
Alignment:
| Q |
1 |
tgtgtagactttcttgtaaacttagcatttgtttgttttcgtgtttgtacatcaatattcgtgcgttttctgtgaagctacttcgtaaaaatcacgtcaa |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33262033 |
tgtgcagactttcttgtaaacttagcatttgtttgttttcgcttttgtacatcaatatttgtgcgttttctgtgaagctacttcataaaaatcacgtcaa |
33261934 |
T |
|
| Q |
101 |
atggtcattgtgacgtgataattttggtcccacagccaaaccaaacaaccacttagagtgtgatcaagtctcggtttgatttctttgttagcttggtgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33261933 |
atggtcattgtgacgtgataattttggtcccacagccaaaccaaacaaccacttagagtgtgatcaagtctcggtttgatttctttgttagcttggtgat |
33261834 |
T |
|
| Q |
201 |
ttgcaagtagatttgacatttataaggttaagtatgattaaagttttattcaaaatagatgtcttagactcaaataactattttatattttcattttaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
33261833 |
ttgcaagtagatttgacatttataaggttaagtatgattaaagtttaattcaaaatagatgtcttagattcaaataactattttatattttcatttcaaa |
33261734 |
T |
|
| Q |
301 |
aatagttgttttt |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
33261733 |
aatagttgttttt |
33261721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 177 - 307
Target Start/End: Complemental strand, 33266457 - 33266328
Alignment:
| Q |
177 |
tgatttctttgttagcttggtgatttgcaagtagatttgacatttataaggttaagtatgattaaagttttattcaaaatagatgtcttagactcaaata |
276 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||||||||||||| |||||||||| | |||||| ||| |||||| ||||||||| |||||||||||| |
|
|
| T |
33266457 |
tgatttccttgttagcttggtggtttgcaagtggatttgacatttacaaggttaagtgtaattaaattttcattcaatatagatgtcctagactcaaata |
33266358 |
T |
|
| Q |
277 |
actattttatattttcattttaaaaatagtt |
307 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
33266357 |
actattttata-tttcattttaaaaatagtt |
33266328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 30514191 - 30514262
Alignment:
| Q |
81 |
cttcgtaaaaatcacgtcaaatggtcattgtgacgtgataattttggtcccacagccaaaccaaacaaccac |
152 |
Q |
| |
|
|||||||||||||| |||||||||||| || ||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
30514191 |
cttcgtaaaaatcatgtcaaatggtcaatgggacgtgataattttggtccaactgccaaaccaaacaaccac |
30514262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 30554531 - 30554602
Alignment:
| Q |
81 |
cttcgtaaaaatcacgtcaaatggtcattgtgacgtgataattttggtcccacagccaaaccaaacaaccac |
152 |
Q |
| |
|
|||||||||||||| |||||||||||| || ||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
30554531 |
cttcgtaaaaatcatgtcaaatggtcaatgggacgtgataattttggtccaactgccaaaccaaacaaccac |
30554602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 30514123 - 30514179
Alignment:
| Q |
26 |
catttgtttgttttcgtgtttgtacatcaatattcgtgcgttttctgtgaagctact |
82 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | | ||||| |||||||||||| |
|
|
| T |
30514123 |
catttatttgttttcgtgtttgtacatcaatatccatatgttttttgtgaagctact |
30514179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 30554463 - 30554519
Alignment:
| Q |
26 |
catttgtttgttttcgtgtttgtacatcaatattcgtgcgttttctgtgaagctact |
82 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | | ||||| |||||||||||| |
|
|
| T |
30554463 |
catttatttgttttcgtgtttgtacatcaatatccatatgttttttgtgaagctact |
30554519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University