View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_4 (Length: 694)
Name: NF5717_high_4
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 556; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 62 - 687
Target Start/End: Complemental strand, 13795272 - 13794648
Alignment:
| Q |
62 |
aattaaaatatgagaattagtttcactgtagaaagaagatcgtgcatcatctatacatgcactatgagctgcatcaatcatgatataatactcgagtaaa |
161 |
Q |
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| T |
13795272 |
aattaaaatatgagaattagtttcactgtagaaagaagatcgtgcatcagctatacatgcactatgagctgcatcaatcatgatataatactcgagtaaa |
13795173 |
T |
|
| Q |
162 |
ttcaaggagagaaaacatcacatagaagtgaagatctaatttgtaacataatatcttaataattcgacaactgatagttgatggcacaaacaagatgctg |
261 |
Q |
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| T |
13795172 |
ttcaaggagagaaaacatcacatagaagtgaagatctaatttgtaacataatatcttaataattcgacaactgatagttgatggcacaaacaagatgctg |
13795073 |
T |
|
| Q |
262 |
gagagatctttcatttcttactgactcatgataactcatcatgcttgaatgcaataatacccgatatttttacgcacagtgtgatctgaatcaatgggat |
361 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13795072 |
gagagatctttcatttcttactgactcatgataactcgtcatgcttgaatgcgataatacccgatatttttacgcacagtgtgatctgaatcaatgggat |
13794973 |
T |
|
| Q |
362 |
caacgagtttatttgaagtcaaaagaacatttcttagcaatcctcgtaatctttttcaataaatgaatcatctacaattttaaataatatttagtaaaca |
461 |
Q |
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| T |
13794972 |
caacgagtttacttgaagtcaaaagaacatttcttagcaatcctcgtaatctttttcaataaatgaatcatctacaattttaaataataattagtaaaca |
13794873 |
T |
|
| Q |
462 |
aaacatatttacatttcgtttccggtggtgacaagtgaaaaacatgtctaactttcctttttgttaaccctaacttttttcaacaagttgagtttctctc |
561 |
Q |
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| T |
13794872 |
aaacatatttacatttcgtttccggtggtgacaagtgaaaaacatgtctaactttcctttttgttaaccctaacttttttcaacaagttgagtttctctc |
13794773 |
T |
|
| Q |
562 |
aatcttgttttattttcaaaattacctttgctact-ccactaaatttgtttgnnnnnnnnnncttgtattggattaggttctctgtttgatgattttatt |
660 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13794772 |
aatcttgttttattttcaaaattacctttgctattgtcactaaatttgtttg--ttttttttcttgtattggattaggttctctgtttgatgattttatt |
13794675 |
T |
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| Q |
661 |
ggattttatcactgattgagttctctg |
687 |
Q |
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| T |
13794674 |
ggattttatcactgattgagttctctg |
13794648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 16025213 - 16025445
Alignment:
| Q |
18 |
atttgacatgctaacaacttatggcttagcatttaagtctttgtaattaaaatatgagaattagtttcactgtagaaagaagatcgtgcatcatctatac |
117 |
Q |
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|||||||| ||||||||||||||||||||| | | ||||| |||| ||||||||||| || ||||| | ||||||||||| ||| | ||| | || ||| |
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| T |
16025213 |
atttgacaatctaacaacttatggcttagcaatcaggtcttggtaactaaaatatgagcatcagttttattgtagaaagaacatcatacattaactgtac |
16025312 |
T |
|
| Q |
118 |
atgcactatgagctgcatcaatcatgatataatactcgagtaaattcaaggagagaaaacatcacatagaagtgaagatctaatttgtaacataatatct |
217 |
Q |
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||||| |||| || ||||||| ||||| ||| |||| || || |||||||||||||||||||||||||||| ||||| ||||||||| || ||| |
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| T |
16025313 |
ccacactacaggctggatgaatcatgttataacacttgagtgaagtctaggagagaaaacatcacatagaagtgaaaatctagtttgtaacacgatgtct |
16025412 |
T |
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| Q |
218 |
taataattcgacaactgatagttgatggcacaa |
250 |
Q |
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| T |
16025413 |
ctagaattcgtcaactgacagttgatggcacaa |
16025445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 13795729 - 13795677
Alignment:
| Q |
18 |
atttgacatgctaacaacttatggcttagcatttaagtctttgtaattaaaat |
70 |
Q |
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| T |
13795729 |
atttgacatgctaacaacttatggcttagcatttaagtcttgataattaaaat |
13795677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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