View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5717_high_40 (Length: 375)

Name: NF5717_high_40
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5717_high_40
NF5717_high_40
[»] chr4 (18 HSPs)
chr4 (62-245)||(1148433-1148616)
chr4 (85-242)||(1164623-1164777)
chr4 (88-188)||(1181262-1181362)
chr4 (88-188)||(1172014-1172114)
chr4 (88-162)||(1137038-1137112)
chr4 (93-162)||(1141697-1141766)
chr4 (22-66)||(19312411-19312455)
chr4 (88-162)||(1145218-1145292)
chr4 (322-364)||(1148693-1148735)
chr4 (22-61)||(18513185-18513224)
chr4 (88-169)||(1133477-1133558)
chr4 (22-63)||(3712463-3712504)
chr4 (25-66)||(22234832-22234873)
chr4 (22-59)||(37203324-37203361)
chr4 (22-66)||(3947711-3947755)
chr4 (22-66)||(14465015-14465059)
chr4 (22-66)||(23292936-23292980)
chr4 (22-66)||(24613640-24613684)
[»] chr5 (2 HSPs)
chr5 (22-66)||(32766882-32766926)
chr5 (23-65)||(42893426-42893468)
[»] scaffold0003 (1 HSPs)
scaffold0003 (22-66)||(241670-241714)
[»] chr7 (6 HSPs)
chr7 (22-66)||(598273-598317)
chr7 (22-66)||(1433524-1433568)
chr7 (22-66)||(21880217-21880261)
chr7 (22-66)||(5409781-5409825)
chr7 (22-62)||(18215147-18215187)
chr7 (22-66)||(29763139-29763183)
[»] chr1 (4 HSPs)
chr1 (22-66)||(9828120-9828164)
chr1 (22-62)||(2218297-2218337)
chr1 (22-66)||(5898216-5898260)
chr1 (22-66)||(6427540-6427584)
[»] chr6 (6 HSPs)
chr6 (23-74)||(33340895-33340946)
chr6 (22-64)||(18803501-18803543)
chr6 (29-67)||(34172252-34172290)
chr6 (22-58)||(7378052-7378088)
chr6 (22-62)||(9025455-9025495)
chr6 (22-66)||(17435275-17435319)
[»] chr8 (3 HSPs)
chr8 (32-65)||(12570458-12570491)
chr8 (32-65)||(12570684-12570717)
chr8 (22-66)||(22652052-22652096)
[»] scaffold0044 (1 HSPs)
scaffold0044 (22-66)||(53256-53300)
[»] chr3 (3 HSPs)
chr3 (22-66)||(4987230-4987274)
chr3 (25-57)||(25211604-25211636)
chr3 (22-66)||(41961589-41961633)
[»] chr2 (1 HSPs)
chr2 (22-66)||(21782754-21782798)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 62 - 245
Target Start/End: Original strand, 1148433 - 1148616
Alignment:
Q  62 gtgtccatatctgtgcttcataggtctaaagccaaaagctcatacataaaatcaatgttgagacacaaaaatgaggcactgcagatagtgttgttgcaga 161  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1148433 gtgtccatatccgtgtttcctaggtctaaagccaaaagctcatacataaaatcaatgttgagacacaaaaatgaggcactgcagataatgttgttgcaga 1148532  T
Q  162 attatgagtaccattgtgcccaccattgtgaccgccattggcaactgcgccgcctacaattccaccgccgataattccaccggc 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1148533 attatgagtaccattgtgcccaccattgtgaccgccattggcaactgtgccgcctacaattccaccgccgataattccaccggc 1148616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 85 - 242
Target Start/End: Original strand, 1164623 - 1164777
Alignment:
Q  85 gtctaaagccaaaagctcatacataaaatcaatgttgagacacaaaaatgaggcactgcagatagtgttgttgcagaattatgagtaccattgtgcccac 184  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || | |||| ||||| |||||||||||||||||||||||||||||    
T  1164623 gtctaaagccaaaagctcatacataaaatcaatgttgatacacaaatatgaggccctcccgataatgttgatgcagaattatgagtaccattgtgcccac 1164722  T
Q  185 cattgtgaccgccattggcaactgcgccgcctacaattccaccgccgataattccacc 242  Q
    ||||||| ||||||||||| | || |||||||| ||   |||| ||||||||||||||    
T  1164723 cattgtgtccgccattggcgagtgtgccgcctataa---caccaccgataattccacc 1164777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 1181262 - 1181362
Alignment:
Q  88 taaagccaaaagctcatacataaaatcaatgttgagacacaaaaatgaggcactgcagatagtgttgttgcagaattatgagtaccattgtgcccaccat 187  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||||||||  |||||||| ||||||||||||||| ||||| ||||||| ||||||||    
T  1181262 taaagccaaaagctcaaacacaaaatcaaagttgagacacaaaaatgaggccatgcagataatgttgttgcagaattctgagtgccattgtacccaccat 1181361  T
Q  188 t 188  Q
    |    
T  1181362 t 1181362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 1172014 - 1172114
Alignment:
Q  88 taaagccaaaagctcatacataaaatcaatgttgagacacaaaaatgaggcactgcagatagtgttgttgcagaattatgagtaccattgtgcccaccat 187  Q
    ||||||||||| |||| ||| ||||||||||| ||||||| ||||||||||  |||||||| ||||||||||||||| ||||| ||||||| ||||||||    
T  1172014 taaagccaaaaactcaaacacaaaatcaatgtggagacactaaaatgaggccatgcagataatgttgttgcagaattctgagtgccattgtacccaccat 1172113  T
Q  188 t 188  Q
    |    
T  1172114 t 1172114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 1137038 - 1137112
Alignment:
Q  88 taaagccaaaagctcatacataaaatcaatgttgagacacaaaaatgaggcactgcagatagtgttgttgcagaa 162  Q
    |||||||||||||||| ||||||||  |||||||||||||||| || |||| ||||||||| || || |||||||    
T  1137038 taaagccaaaagctcaaacataaaagaaatgttgagacacaaacataaggccctgcagataatgatggtgcagaa 1137112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 1141697 - 1141766
Alignment:
Q  93 ccaaaagctcatacataaaatcaatgttgagacacaaaaatgaggcactgcagatagtgttgttgcagaa 162  Q
    ||||||||||| ||||||||| |||||||||||||||| || |||| ||||||||| || || |||||||    
T  1141697 ccaaaagctcaaacataaaataaatgttgagacacaaacataaggccctgcagataatgatgatgcagaa 1141766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 19312455 - 19312411
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    ||||||||||||||||||||||||||  |||||||||||||||||    
T  19312455 cggacacttctcagattagacgtgtctcggtgtcggacacgtgtc 19312411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 1145218 - 1145292
Alignment:
Q  88 taaagccaaaagctcatacataaaatcaatgttgagacacaaaaatgaggcactgcagatagtgttgttgcagaa 162  Q
    ||||||||||||||||| ||||| |  ||||||||||||| |||||||| |  |||||| | |||||||||||||    
T  1145218 taaagccaaaagctcatgcataagaaaaatgttgagacaccaaaatgagtccttgcagaaactgttgttgcagaa 1145292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 364
Target Start/End: Original strand, 1148693 - 1148735
Alignment:
Q  322 gtcgaaaatcttatggcaacagaaagttcatgtttatgttcat 364  Q
    |||||||| ||||||||| ||||||||||||||||||||||||    
T  1148693 gtcgaaaaacttatggcatcagaaagttcatgtttatgttcat 1148735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 18513185 - 18513224
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacac 61  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  18513185 cggacactcctcagattaggcgtgtcctggtgtcggacac 18513224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 1133477 - 1133558
Alignment:
Q  88 taaagccaaaagctcatacataaaatcaatgttgagacacaaaaatgaggcactgcagatagtgttgttgcagaattatgag 169  Q
    |||||||||||| | | ||||||||| |||||||||| |||||||| || | ||||| | | || || ||||||||||||||    
T  1133477 taaagccaaaagattacacataaaataaatgttgagaaacaaaaataagtccctgcataaaatgatgctgcagaattatgag 1133558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 3712463 - 3712504
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgt 63  Q
    |||||||| |||||||||| ||||||| ||||||||||||||    
T  3712463 cggacactcctcagattagccgtgtcccggtgtcggacacgt 3712504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 22234832 - 22234873
Alignment:
Q  25 acacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    ||||||||| ||||||  ||||||||||||||||||||||||    
T  22234832 acacttctcggattagctgtgtcctggtgtcggacacgtgtc 22234873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 37203361 - 37203324
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggac 59  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  37203361 cggacacttctcggattagacgtgtcccggtgtcggac 37203324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 3947711 - 3947755
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    |||||||| ||| ||||||  ||||||||||||||||||||||||    
T  3947711 cggacactcctcggattaggtgtgtcctggtgtcggacacgtgtc 3947755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 14465015 - 14465059
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    |||||||| ||||||||||||||||||  |||||| |||||||||    
T  14465015 cggacactcctcagattagacgtgtcccagtgtcgaacacgtgtc 14465059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 23292936 - 23292980
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    |||||||| ||| |||||| ||||||| |||||||||||||||||    
T  23292936 cggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc 23292980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 24613640 - 24613684
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    |||||||| ||  ||||||||||||||||||||| ||||||||||    
T  24613640 cggacactcctaggattagacgtgtcctggtgtcagacacgtgtc 24613684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 32766882 - 32766926
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    |||||||| |||||||||||||| |||||||||||||||||||||    
T  32766882 cggacactcctcagattagacgtatcctggtgtcggacacgtgtc 32766926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 42893468 - 42893426
Alignment:
Q  23 ggacacttctcagattagacgtgtcctggtgtcggacacgtgt 65  Q
    ||||||| |||| ||||| ||||||||||||||||||||||||    
T  42893468 ggacactcctcatattaggcgtgtcctggtgtcggacacgtgt 42893426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 241714 - 241670
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    |||||||||||| |||||| ||||||| |||||||||||||||||    
T  241714 cggacacttctcggattaggcgtgtcccggtgtcggacacgtgtc 241670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 598317 - 598273
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    |||||||||||| |||||| ||||||| |||||||||||||||||    
T  598317 cggacacttctcggattaggcgtgtcccggtgtcggacacgtgtc 598273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 1433568 - 1433524
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    |||||||| ||| ||||||||||||||||||||||||||| ||||    
T  1433568 cggacactcctcggattagacgtgtcctggtgtcggacacatgtc 1433524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 21880261 - 21880217
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    |||||||||||| |||||| ||||||||||||||||||| |||||    
T  21880261 cggacacttctcggattaggcgtgtcctggtgtcggacatgtgtc 21880217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 5409781 - 5409825
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    |||||||| ||| |||||| ||||||| |||||||||||||||||    
T  5409781 cggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc 5409825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 18215147 - 18215187
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacg 62  Q
    |||||||| |||||||||| ||||||| |||||||||||||    
T  18215147 cggacactcctcagattaggcgtgtcccggtgtcggacacg 18215187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 29763139 - 29763183
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    |||||||| ||| |||||| ||||||||| |||||||||||||||    
T  29763139 cggacactcctcggattaggcgtgtcctgatgtcggacacgtgtc 29763183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 9828164 - 9828120
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    |||||||| ||| |||||||||||||| |||||||||||||||||    
T  9828164 cggacactcctcggattagacgtgtcccggtgtcggacacgtgtc 9828120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 2218337 - 2218297
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacg 62  Q
    |||||||| |||||||||| |||||||| ||||||||||||    
T  2218337 cggacactcctcagattaggcgtgtcctagtgtcggacacg 2218297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 5898216 - 5898260
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    |||||||| ||| |||||||||||||| ||||| |||||||||||    
T  5898216 cggacactcctcggattagacgtgtcccggtgttggacacgtgtc 5898260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 6427584 - 6427540
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    ||||||||  ||||||||| ||||||| |||||||||||||||||    
T  6427584 cggacactcatcagattaggcgtgtcccggtgtcggacacgtgtc 6427540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 33340895 - 33340946
Alignment:
Q  23 ggacacttctcagattagacgtgtcctggtgtcggacacgtgtccatatctg 74  Q
    ||||||||||||||||||||||||||  |||||||||||  ||| |||||||    
T  33340895 ggacacttctcagattagacgtgtcccagtgtcggacacacgtcgatatctg 33340946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 18803501 - 18803543
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtg 64  Q
    |||||||||||| |||||||||||||||| ||||||| |||||    
T  18803501 cggacacttctcggattagacgtgtcctgatgtcggatacgtg 18803543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 34172290 - 34172252
Alignment:
Q  29 ttctcagattagacgtgtcctggtgtcggacacgtgtcc 67  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  34172290 ttctcggattaggcgtgtcctggtgtcggacacgtgtcc 34172252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 7378088 - 7378052
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcgga 58  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  7378088 cggacacttctcagattagccgtgtcccggtgtcgga 7378052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 9025455 - 9025495
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacg 62  Q
    |||||||||||| |||||| ||||||| |||||||||||||    
T  9025455 cggacacttctcggattaggcgtgtcccggtgtcggacacg 9025495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 17435319 - 17435275
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    ||||||||| |||||||||||||||||  |||||| |||||||||    
T  17435319 cggacacttttcagattagacgtgtcccagtgtcgaacacgtgtc 17435275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 12570458 - 12570491
Alignment:
Q  32 tcagattagacgtgtcctggtgtcggacacgtgt 65  Q
    ||||||||| ||||||||||||||||||||||||    
T  12570458 tcagattaggcgtgtcctggtgtcggacacgtgt 12570491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 12570684 - 12570717
Alignment:
Q  32 tcagattagacgtgtcctggtgtcggacacgtgt 65  Q
    ||||||||| ||||||||||||||||||||||||    
T  12570684 tcagattaggcgtgtcctggtgtcggacacgtgt 12570717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 22652096 - 22652052
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    |||||||| ||| |||||||||||||| |||||||||||| ||||    
T  22652096 cggacactcctcggattagacgtgtcccggtgtcggacacatgtc 22652052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 53300 - 53256
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    |||||||||||  ||||| |||||||| |||||||||||||||||    
T  53300 cggacacttcttggattaaacgtgtcccggtgtcggacacgtgtc 53256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 4987230 - 4987274
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    |||||||| ||| |||||| ||||||| |||||||||||||||||    
T  4987230 cggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc 4987274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 25211636 - 25211604
Alignment:
Q  25 acacttctcagattagacgtgtcctggtgtcgg 57  Q
    |||||||||||||||| ||||||||||||||||    
T  25211636 acacttctcagattaggcgtgtcctggtgtcgg 25211604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 41961589 - 41961633
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    |||||||||||| |||||| |||||||  ||||||||||||||||    
T  41961589 cggacacttctcggattaggcgtgtcccagtgtcggacacgtgtc 41961633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 21782754 - 21782798
Alignment:
Q  22 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 66  Q
    |||||||| | |||||||||||||||| ||||| |||||||||||    
T  21782754 cggacactccacagattagacgtgtcccggtgttggacacgtgtc 21782798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University