View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_44 (Length: 363)
Name: NF5717_high_44
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 51961926 - 51961621
Alignment:
| Q |
21 |
tctggaggaacaaattccaagatcccaaaccaacatgagacctctacttccgtttttaaaatagtgttagtagtaataataaatcaagcataatgtgtta |
120 |
Q |
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| T |
51961926 |
tctggaagaacaaattccaagatcccaaacaaaca-gagacctctacttccatttttaaaatagtgttagtagtaataataaatcaagcataatgtgtta |
51961828 |
T |
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| Q |
121 |
ttacataaaatttggtttttgacatagcacaattatattatttcattattaaatgagaatataaaatggaaaccaactataagaatgtggttgtttgagt |
220 |
Q |
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| T |
51961827 |
ttacataaaatttggtttttgacatagcacaattatattatttcattattaaatgagaatataaaatggaaaccaactataagaatgtggttgtttgagt |
51961728 |
T |
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| Q |
221 |
taagacagacgacctaatagtagatttgtctctaataaaaccaattttagaaattttcaatacagaataaaatctgccaacaaaacaatccacatttatg |
320 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51961727 |
taagacagacgaccaaatagtagatttgtctctaataaaaacaactttagaaattttcaatacagaataaaatctgccaacaaaacaatccacatttatg |
51961628 |
T |
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| Q |
321 |
aaacaaa |
327 |
Q |
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| T |
51961627 |
aaacaaa |
51961621 |
T |
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