View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_45 (Length: 362)
Name: NF5717_high_45
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_45 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 31037156 - 31036810
Alignment:
| Q |
19 |
gtcaagtattgttatctttaagaaggaagaaaatagagctgagagagaatgttcaaaaaggaatagtaccttttccttcgtctacaaactacatcagaat |
118 |
Q |
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| T |
31037156 |
gtcaagtattgttatctttaagaaggaagaaaatagagctgagagagaatgttcaaaaaggaatagtaccttttccttcgtctacaaactacatcagaat |
31037057 |
T |
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| Q |
119 |
gagaatgtacctgtaatatactatgttttcaactaaggtaccacacaagctttaagaaacttgaccaaaccttaatgtcaaataatccaactttgtatca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31037056 |
gagaatgtacctgtaatatactatgttttcaactaaggtaccacacaagctttaagaaacttgaccaaaccttaatgtcaaataatccaactttgtctca |
31036957 |
T |
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| Q |
219 |
gcttctctatatacttttacacgatgcaaccttctctgtatacgatcttttccattcactggccatcggccctccattagaccaaacgccaacgcctttg |
318 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
31036956 |
gcttctctatatacttttacacgatacaaccttctctgtatacgattttttccattcactggccctcggccctccattagaccatacgccaacgcctttg |
31036857 |
T |
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| Q |
319 |
ccatccagcgcatttgctgag---tggtcccacattgtttgagatgc |
362 |
Q |
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|||||||||||||||| |||| |||||||| |||||||||||||| |
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| T |
31036856 |
ccatccagcgcatttgatgagtcctggtcccaaattgtttgagatgc |
31036810 |
T |
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