View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_high_49 (Length: 347)
Name: NF5717_high_49
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_49 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 4425407 - 4425731
Alignment:
| Q |
18 |
ttattgagtttaaaattgtaatcccgcaaaatggtatctaaaattgtagtgtcttgtcaaattagtgtttggaataccagaaaatccaagtaagagtcct |
117 |
Q |
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| T |
4425407 |
ttattgagtttaaaattgtaatcccgcgaaatggtatctaaaattgtagtgtcttgtcaaattagtctttggaataccagaaaatccaagtaagagtcct |
4425506 |
T |
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| Q |
118 |
tgaaagtggaaatttggatattactctttattagcaaacatttaaaaatagtctctgtaggtgaatacttgcaatcaaattgattccagagaaaatggtt |
217 |
Q |
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| T |
4425507 |
tgaaagtggaaatttggatatcactctttattagcaaacgtttaaaaatagtctctgtaggtgaatacttgcaatcaaattggttccagagaaaatggtc |
4425606 |
T |
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| Q |
218 |
tacaattttcagttttagaaactattttgaatttctctagtttgacgaccaactaactaaatagcacctataattttggggaccag-tttggatattcat |
316 |
Q |
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| T |
4425607 |
ggcaattttcagttttagaaactattttgaatttctctaatttgacgactaactaactaaatagcacctataattttggggaccagttttggatattcat |
4425706 |
T |
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| Q |
317 |
tccaattgatgtggtctgcctttgc |
341 |
Q |
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| T |
4425707 |
tccaattgatgtggtctgcctttgc |
4425731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 4974133 - 4974194
Alignment:
| Q |
138 |
ttactctttattagcaaacatttaaaaatagtctctgtaggtgaatacttgcaatcaaattg |
199 |
Q |
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| T |
4974133 |
ttactctttattagcaaacatttaaaataagtctctaaagttgaattcttaaaatcaaattg |
4974194 |
T |
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