View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5717_high_50 (Length: 346)
Name: NF5717_high_50
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_50 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 4 - 260
Target Start/End: Original strand, 36209007 - 36209263
Alignment:
| Q |
4 |
gacaccatgaggtttcttgaggatccaattgacttgtttgtagaaggttgagaggtcaaaccagtgaagagcttgagcaatggtcacaaggtctatggtt |
103 |
Q |
| |
|
|||||||| |||||||||||| | |||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36209007 |
gacaccattaggtttcttgagaacccaattaacttgtttgtagaaggttgagaggtcaagccagtgaagggcttgagcaatggtcacaaggtctatggtt |
36209106 |
T |
|
| Q |
104 |
ccttgaaatgataccatttgttcaagctcagtcatggacattgttgaatgggtgtgctcgtatcgcacattaggaagcctggttgcaaattcaagttgtt |
203 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||| | |||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
36209107 |
ccttgaggtgacaccatttgttcaagctcagtcatggacatggttgatggggtgtgttggtatcgtacattaggaagcttggttgcaaattcaagttgtt |
36209206 |
T |
|
| Q |
204 |
tctcactagcatcggtagctactacattgttgtacaatgttgctaactgaaatcaca |
260 |
Q |
| |
|
||||||||||||| || |||| ||||| ||||||| ||| |||||||||||||| |
|
|
| T |
36209207 |
tctcactagcatctgtggctatgacattcttgtacagtgtacttaactgaaatcaca |
36209263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 140 - 329
Target Start/End: Original strand, 36206181 - 36206367
Alignment:
| Q |
140 |
gacattgttgaatgggtgtgctcgtatcgcacattaggaagcctggttgcaaattcaagttgtttctcactagcatcggtagctactacattgttgtaca |
239 |
Q |
| |
|
||||| ||||| ||||||| | ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36206181 |
gacatggttgatggggtgtgttggtatcgcacattatgaagcaaggttgcaaattcaagttgtttctcactagcatcggtagctactacattgttgtaca |
36206280 |
T |
|
| Q |
240 |
atgttgctaactgaaatcacagattagttttttgttaagagtaaaaacaattgtaagaacaaaagttatatagtacgaaatcacaaatat |
329 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36206281 |
atgtagctaactgaaatcacagattagttttttgtt---agtaaaaacaattgaaagaacaaaagttgtatagtacgaaatcacaaatat |
36206367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 36205918 - 36206062
Alignment:
| Q |
1 |
aatgacaccatgaggtttcttgaggatccaattgacttgtttgtagaaggttgagaggtcaaaccagtgaagagcttgagcaatggtcacaaggtctatg |
100 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36205918 |
aatgataccatgaggtttcttgaggacccaattgacttgcttgtagaaggttgagaggtcaaaccagtgaagagcttgagcaatggtgacaaggtctatg |
36206017 |
T |
|
| Q |
101 |
gttccttgaaatgataccatttgttcaagctcagtcatggacatt |
145 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| |||||||||| |
|
|
| T |
36206018 |
gttccttgagatgacaccatttgttcaagctcagccatggacatt |
36206062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 35399773 - 35399516
Alignment:
| Q |
1 |
aatgacaccatgaggtttcttgaggatccaattgacttgtttgtagaaggttgagaggtcaaaccagtgaagagcttgagcaatggtcacaaggtctatg |
100 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| |||||||||| ||||| ||| |||||||||||| ||||| |||||||||| ||||||||||||||| |
|
|
| T |
35399773 |
aatgactccatgaggtttcttgagtacccatttgacttgttgatagaaatttgggaggtcaaaccaatgaaggccttgagcaatagtcacaaggtctatg |
35399674 |
T |
|
| Q |
101 |
gttccttgaaatgataccatttgttcaagctcagtcatggacattgttgaatgggtgtgctcgtatcgcacattaggaagcctggttgcaaattcaagtt |
200 |
Q |
| |
|
|||||||| || ||| |||||||||||||| | ||||||||||||||| ||||||| | |||| |||||||||| ||| |||||||||||||||||| |
|
|
| T |
35399673 |
gttccttgtggtgttacaatttgttcaagctcgggaatggacattgttgaaggggtgtgtttgtattgcacattagggagcttggttgcaaattcaagtt |
35399574 |
T |
|
| Q |
201 |
gtttctcactagcatcggtagctactacattgttgtacaatgttgctaactgaaatca |
258 |
Q |
| |
|
||| |||||| |||| ||||| | ||||| |||||||||| |||||||||||||| |
|
|
| T |
35399573 |
gttgttcactaacatctgtagcaatgacattcttgtacaatgcagctaactgaaatca |
35399516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 35404702 - 35404444
Alignment:
| Q |
1 |
aatgacaccatgaggtttcttgaggatccaattgacttgtttgtagaaggttgagaggtcaaaccagtgaagagcttgagcaatggtcacaaggtctatg |
100 |
Q |
| |
|
|||||| ||||||||||| ||||| | ||| || ||||||| ||||| ||| || ||||||||| |||||| |||||||||| ||||||||||||||| |
|
|
| T |
35404702 |
aatgactccatgaggttttttgagtacccattttacttgttgatagaaatttgggaagtcaaaccaatgaagaccttgagcaatagtcacaaggtctatg |
35404603 |
T |
|
| Q |
101 |
gttccttgaaatgataccatttgttcaagctcagtcatggacattgttgaa-tgggtgtgctcgtatcgcacattaggaagcctggttgcaaattcaagt |
199 |
Q |
| |
|
|||||||| || ||| |||||||||||||| | ||||||||||||||| ||||||| | |||| |||||||||| || ||||||||||||||||| |
|
|
| T |
35404602 |
gttccttgtggtgttacaatttgttcaagctcgggaatggacattgttgaagggggtgtgtttgtattgcacattagggagtttggttgcaaattcaagt |
35404503 |
T |
|
| Q |
200 |
tgtttctcactagcatcggtagctactacattgttgtacaatgttgctaactgaaatca |
258 |
Q |
| |
|
|||| ||||| |||| || |||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
35404502 |
tgttgttcactcacatctgtggctatgacatttttgtacaatgtagctaactgaaatca |
35404444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University