View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5717_high_56 (Length: 324)
Name: NF5717_high_56
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_high_56 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 71 - 324
Target Start/End: Complemental strand, 5894401 - 5894150
Alignment:
| Q |
71 |
aattactacctcaaagattccatctgagtatttataccactgtatgtttatcgccttccgaggacgagggcggcgcgaagaagctcaacatttcctctcc |
170 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| |||||||||||||||| |
|
|
| T |
5894401 |
aattactacctcaaaggttccatctgagtatttataccactgtatgtttatcgccttccaaggaagagggcggcgcgaataaggtcaacatttcctctcc |
5894302 |
T |
|
| Q |
171 |
aaatgtgtccaagccacattcaagactatgctgatctcttagatctcttttgttccatgaactctaaagatgctgctgcaccttctggtatgttgggctg |
270 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5894301 |
aaatgt--ccaagccacattcaagactatgctgatctcttagatctcttttgttccatgaactctaaagatgctgctgcaccttctggtatgttgggctg |
5894204 |
T |
|
| Q |
271 |
taattggctgcttaagtttacaaaatgtagctcataacgtaactcttgtatatt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5894203 |
taattggctgcttaagtttacaaaatgtagctcataacgtaactcttgtatatt |
5894150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 5894652 - 5894598
Alignment:
| Q |
18 |
gtctactccatatcttaggatgaaggactatatattattttaccggaactttgaa |
72 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||| ||||| ||||||||| |
|
|
| T |
5894652 |
gtctactccatatcttaggatgcaggattatatattatcttaccacaactttgaa |
5894598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 5879678 - 5879625
Alignment:
| Q |
207 |
tcttagatctcttttgttccatgaactctaaagatgctgctgcaccttctggta |
260 |
Q |
| |
|
|||| |||||||||| |||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
5879678 |
tcttggatctcttttattccatgaactccaaagaagctgctgcttcttctggta |
5879625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University