View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5717_high_59 (Length: 316)

Name: NF5717_high_59
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5717_high_59
NF5717_high_59
[»] chr3 (2 HSPs)
chr3 (19-311)||(36103231-36103524)
chr3 (31-311)||(36141547-36141837)
[»] chr1 (1 HSPs)
chr1 (19-311)||(10856423-10856725)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 36103231 - 36103524
Alignment:
Q  19 attttgaagtacataaacttgcatgagatcaagattcaggtataggatttgggtttatcaactcctcactatatcgagtttgacatgaaaacagccttta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36103231 attttgaagtacataaacttgcatgagatcaagattcaggtataggatttgggtttatcaactcctcgctatatcgagtttgacatgaaaacagccttta 36103330  T
Q  119 gcattgttgatgatctaaactcttaagtattgccgtggataggcaattctacctagtgggaacaaactttcaagtttgctgaaattattaatatatactg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36103331 gcattgttgatgatctaaactcttaagtattgccgtggataggcaattctacctagtgggaacaaactttcaagtttgctgaaattattaatatatactg 36103430  T
Q  219 tcaagctag-nnnnnnnncatatatacatttgggctaaaagaaaaaaccttgagcaatttttctaaattgctttgttcatgtccctatgctact 311  Q
    |||||||||         |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  36103431 tcaagctagtttttttttcatatatacatttgggctaaaagaaaaaacctggagcaatttttctaaattgctttgttcatgtccttatgctact 36103524  T

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Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 31 - 311
Target Start/End: Original strand, 36141547 - 36141837
Alignment:
Q  31 ataaacttgcatgagatcaagattcaggtataggatttgggtttatcaactcctcactata---------tcgagtttgacatgaaaacagcctttagca 121  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||         |||||||||||||||||||| |||||||||    
T  36141547 ataaacttgcatgagatcaagatttaggtataggatttgggtttatcaactcctcactataccaagactatcgagtttgacatgaaaacaacctttagca 36141646  T
Q  122 ttgttgatgatctaaactcttaagtattgccgtggataggcaattctacctagtgggaacaaactttcaagtttgctgaaattattaatatatactgtca 221  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36141647 ttgttgatgatctaagctcttaagtattgtcgtggataggcaattctacctagtgggaacaaactttcaagtttgctgaaattattaatatatactgtca 36141746  T
Q  222 agctag-nnnnnnnncatatatacatttgggctaaaagaaaaaaccttgagcaatttttctaaattgctttgttcatgtccctatgctact 311  Q
    ||||||         ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36141747 agctagtttttttttcatatatacatttgggctataagaaaaaaccttgagcaatttttctaaattgctttgttcatgtccttatgctact 36141837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 10856423 - 10856725
Alignment:
Q  19 attttgaagtacataaacttgcatgagatcaagattcaggtataggatttgggtttatcaactcctcactatatcgag---------tttgacatgaaaa 109  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||         |||||||||||||    
T  10856423 attttgaagtacataaacttgcatgtgatcaagattcaggtataggatttgggtttatcaactcctcactataccaagactattaagtttgacatgaaaa 10856522  T
Q  110 cagcctttagcattgttgatgatctaaactcttaagtattgccgtggataggcaattctacctagtgggaacaaactttcaagtttgctgaaattattaa 209  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10856523 cagcctttagcattgttgatgatctaaactcttacgtattgccgtggataggcaattctacctagtgggaacaaactttcaagtttgctgaaattattaa 10856622  T
Q  210 tatatactgtcaagctag-nnnnnnnncatatatacatttgggctaaaagaaaaaaccttgagcaatttttctaaattgctttgttcatgtccctatgct 308  Q
    ||||||||||||||||||         ||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  10856623 tatatactgtcaagctagtttttttttcatatgtacatttgggctataagaaaaaacgttgagcaatttttctaaattgctttgttcatgtccttatgct 10856722  T
Q  309 act 311  Q
    |||    
T  10856723 act 10856725  T

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